Description Usage Arguments Value
Select out the candidate fusions for the given samples as a new data. For each samples, include any fusion involving either gene. May not care about a specific sample-gene1-gene2 combo, but that is for something else to filter.
1 | getCandidateFusions(fusionDF, sample, gene1, gene2)
|
fusionDF |
The data frame of fusion data |
sample |
The vector of sample names to filter by |
gene1 |
The vector of gene names to filter by (either end) |
gene2 |
Another vector of gene name to filter by (either end) |
The rows from the data frame matching any given sample and where both fusion gene ends are in the one of the two lists given (in any combination)
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