Files in jefferys/fusionExpressionPlot
Plot Expression Profiles for Fused Genes

.Rbuildignore
.gitignore
DESCRIPTION
FusionExpressionPlot.Rproj
NAMESPACE
R/cohortFusions.R R/cohortNormalizedExpression.R R/dataRangeReductionUtils.R R/fusionExpressionPlot.R R/gafGeneModels.R R/grUtils.R R/stringUtils.R R/systemRunUtils.R csde1_test1.pdf
man/.Rapp.history
man/FusionExpressionPlot.Rd man/addExonExpression.Rd man/do.allPlots.Rd man/do.plots.Rd man/extractGeneModels.Rd man/extractTranscriptModels.Rd man/filterFusions.Rd man/genomicToModelCoordinates.Rd man/getCandidateFusions.Rd man/getCohortExonExpressionData.Rd man/getFusionExpressionPlotData.Rd man/getMapSpliceCohortFusionData.Rd man/grAddColumn.Rd man/grFromCohortDf.Rd man/grFromElementString.Rd man/grFromLocationString.Rd man/grNew.Rd man/grToElementString.Rd man/grToLocationString.Rd man/grToRect.Rd man/is.safeFileName.Rd man/loadCohortDefinition.Rd man/loadExonExpressionFile.Rd man/loadGafModels.Rd man/mapColors.Rd man/mapLabels.Rd man/normExpressionData.Rd man/plotFusionExpressionOne.Rd man/plotFusionExpressionPair.Rd man/plotFusionExpressionPlotData.Rd man/plotGeneExpression.Rd man/pointToPoly.Rd man/regexprNamedMatches.Rd man/slurp.Rd man/templateFill.Rd tests/testthat.R
tests/testthat/data/CopyOfmock.gaf
tests/testthat/data/mock.exonExpression
tests/testthat/data/mock.gaf
tests/testthat/data/mock.gaf.extract.dup.geneModels
tests/testthat/data/mock.gaf.extract.dupNoUnk.geneModels
tests/testthat/data/mock.gaf.extract.geneModels
tests/testthat/data/mock.gaf.extract.transcriptModels
tests/testthat/data/tiny.bt.exon_quantification.txt
tests/testthat/test_0.r tests/testthat/test_cohortFusions.r tests/testthat/test_cohortNormalizedExpression.r tests/testthat/test_dataRangeReductionUtils.r tests/testthat/test_fusionExpressionPlot.r tests/testthat/test_gafGeneModels.r tests/testthat/test_grUtils.r tests/testthat/test_stringUtils.r tests/testthat/test_systemRunUtils.r vignettes/Walkthrough.Rmd vignettes/workingWIthGRangeObjects.Rmd
jefferys/fusionExpressionPlot documentation built on May 19, 2019, 3:59 a.m.