getMapSpliceCohortFusionData: Load a mapplice cohort fusion file.

Description Usage Arguments Value

Description

Load a mapplice cohort fusion file.

Usage

1

Arguments

file

The path to the data file to load.

all.columns

Set TRUE to load all columns from data file. By default (all.columns=FALSE) only loads and returns some columns (see below).

Value

By default only returns the following columns:

id was the row number original row number
gene1 was D_gene donor side gene
gene2 was A_gene acceptor side gene
gene1pos was D_end Last genomic donor side position
gene2pos was A_end First genomic acceptor side position
sample was tcga_id The sample name

If all.columns= TRUE, all of the other columns from the fusion data file will be kept, with the original names.


jefferys/fusionExpressionPlot documentation built on May 19, 2019, 3:59 a.m.