Files in jendelman/StageWise
Two-stage analysis of multi-environment trials for genomic selection and GWAS
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/Stage1.R
R/Stage2.R
R/blup.R
R/blup_prep.R
R/class_geno.R
R/class_genoD.R
R/class_prep.R
R/class_var.R
R/corr.R
R/dominance.R
R/gain.R
R/gwas_threshold.R
R/inbreeding.R
R/manhattan_plot.R
R/predict.geno.R
R/private_functions.R
R/quantile.geno.R
R/read_geno.R
R/remove_spatialtrend.R
R/summary.var.R
R/uniplot.R
R/wheat-data.R
README.Rmd
README.md
data/wheat.rda
docs/Vignette1.html
docs/Vignette2.html
docs/Vignette3.html
docs/manual.pdf
inst/CITATION
inst/vignette_data/geno1.csv
inst/vignette_data/geno2.csv
inst/vignette_data/ped.csv
inst/vignette_data/pheno1a.csv
inst/vignette_data/pheno1b.csv
inst/vignette_data/pheno2.csv
man/Stage1.Rd
man/Stage2.Rd
man/blup.Rd
man/blup_prep.Rd
man/class_geno-class.Rd
man/class_genoD-class.Rd
man/class_prep-class.Rd
man/class_var-class.Rd
man/corr.Rd
man/dominance.Rd
man/gain.Rd
man/gwas_threshold.Rd
man/inbreeding.Rd
man/manhattan_plot.Rd
man/predict.Rd
man/quantile.Rd
man/read_geno.Rd
man/remove_spatialtrend.Rd
man/summary.var.Rd
man/uniplot.Rd
man/wheat.data.Rd
vignettes/Vignette1.Rmd
vignettes/Vignette2.Rmd
vignettes/Vignette3.Rmd
