class_genoD-class: S4 class for marker genotype data with dominance

In jendelman/StageWise: Two-stage analysis of multi-environment trials for genomic selection and GWAS

S4 class for marker genotype data with dominance

Description

S4 class for marker genotype data with dominance

Slots

ploidy

ploidy

map

Marker map positions

coeff

Coefficients of the additive marker effects (dim: indiv x marker)

scale

Scaling factor between markers and indiv for additive effects

G

Additive relationship matrix (from markers and potentially also pedigree)

eigen.G

list of eigenvalues and eigenvectors for G

coeff.D

coefficients of the dominance marker effects (dim: indiv x marker)

scale.D

Scaling factor between markers and indiv for dominance effects

D

Dominance relationship matrix

eigen.D

list of eigenvalues and eigenvectors for D

Fg

genomic inbreeding coefficient (based on dominance)

jendelman/StageWise documentation built on Feb. 23, 2025, 11 a.m.