class_prep-class: S4 class to prepare for blup

In jendelman/StageWise: Two-stage analysis of multi-environment trials for genomic selection and GWAS

S4 class to prepare for blup

Description

S4 class to prepare for blup

Slots

id

genotype identifiers

ploidy

ploidy

var.u

variance of random effects

var.uhat

variance of BLUPs

avg.env

average fixed effect of the environments

heterosis

regression coefficients for inbreeding

fixed.marker

fixed marker effects

B

var-cov matrix for fixed effects

random

random effect estimates

geno1.var

first var-cov matrix from class_var

geno2.var

second var-cov matrix from class_var

model

model from class_var

jendelman/StageWise documentation built on Feb. 23, 2025, 11 a.m.