manhattan_plot: Create Manhattan plot
In jendelman/StageWise: Two-stage analysis of multi-environment trials for genomic selection and GWAS
View source: R/manhattan_plot.R
manhattan_plot R Documentation
Create Manhattan plot
Description
Create Manhattan plot
Usage
manhattan_plot(data, chrom = NULL, thresh = NULL, rotate.label = FALSE)
Arguments
data
data frame with columns for marker, chrom, position, and score
chrom
optional, to plot only one chromosome
thresh
optional, to include horizontal line at discovery threshold
rotate.label
TRUE/FALSE whether to rotate x-axis labels to be perpendicular
Details
Assumes position in bp
Value
ggplot2 object
jendelman/StageWise documentation built on Feb. 23, 2025, 11 a.m.
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View source: R/manhattan_plot.R
| manhattan_plot | R Documentation |
Create Manhattan plot
Description
Create Manhattan plot
Usage
manhattan_plot(data, chrom = NULL, thresh = NULL, rotate.label = FALSE)
Arguments
data |
data frame with columns for marker, chrom, position, and score |
chrom |
optional, to plot only one chromosome |
thresh |
optional, to include horizontal line at discovery threshold |
rotate.label |
TRUE/FALSE whether to rotate x-axis labels to be perpendicular |
Details
Assumes position in bp
Value
ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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