class_geno-class: S4 class for marker genotype data

In jendelman/StageWise: Two-stage analysis of multi-environment trials for genomic selection and GWAS

S4 class for marker genotype data

Description

S4 class for marker genotype data

Slots

ploidy

If mixed ploidy, then a vector equal to pop size; otherwise a single integer

map

Marker map positions

coeff

Coefficients of the marker effects (dim: indiv x marker)

scale

Scaling factor between markers and indiv, vector of length equal to pop size

G

Additive relationship matrix (from markers and potentially also pedigree)

eigen.G

list of eigenvalues and eigenvectors

jendelman/StageWise documentation built on Feb. 23, 2025, 11 a.m.