Man pages for jendelman/diaQTL
QTL Analysis in Diallel Populations
| BayesCI | Bayesian Credible Interval for QTL position |
| convert_mappoly | Generate diaQTL input files from MAPpoly |
| convert_onemap | Generate diaQTL input files from OneMap |
| convert_polyorigin | Create diaQTL input files from PolyOrigin output |
| convert_rabbit | Generate diaQTL input files from RABBIT MagicReconstruct |
| diallel_geno-class | S4 class with genotype data |
| diallel_geno_pheno-class | S4 class with genotype and phenotype data |
| DIC_thresh | delta DIC thresholds for scan1 |
| diplo_freq | Diplotype frequencies |
| diplo_get | Dosage of parental diplotypes |
| F1codes | Genotype codes for F1 populations |
| faa | Construct incidence matrix for additive x additive epistasis |
| fine_map | Visualize haplotype switches for fine mapping |
| fitQTL | Fit multiple QTL model |
| get_map | Get map summary from diallel_geno object |
| haplo_cluster | Cluster parental haplotypes |
| haplo_freq | Haplotype frequencies |
| haplo_get | Dosage of parental haplotypes |
| haplo_match | Match up parental haplotypes |
| haplo_plot | Plot parental haplotype dosage |
| IBDmat | Realized IBD relationship |
| phased_parents | Visualize phased SNPs of parents |
| read_data | Read data files |
| runBGLR | Xqtl is list of length equal to the number of QTL, and each... |
| S1codes | Genotype codes for S1 populations |
| scan1 | Single QTL scan |
| scan1_permute | Permutation test for scan1 |
| scan1_summary | Summary of scan1 result |
| set_params | Determine number of iterations for MCMC |
