Files in jfores/SurvMap

Mapper Survival Analysis for Transcriptomic Data

LICENSE.md R/An_Functions.R R/Clust_Assign.R R/Diff_Gen_Exp_Enrich.R R/Filter_Funct.R R/Flat_And_Dis_Comp.R R/Gene_Select_And_Surv.R R/Matrix_Denoising.R R/One_D_Mapper.R R/Plotting_Functions.R R/SurvMap.R R/WGCNA_Analysis_Functions.R R/data.R data-raw/GSE42568.R man/GEO_Eset_Norm_frma_Collapsed.Rd man/SurvMap.Rd man/assign_promiscuous_samples.Rd man/aux_function_select_top_diff.Rd man/axuiliar_function_to_mean.Rd man/block_wise_mod.Rd man/clust_all_levels.Rd man/clust_lev.Rd man/compute_node_adjacency.Rd man/compute_power_tables.Rd man/compute_u_mat_and_eigen.Rd man/cox_all_genes.Rd man/create_data_frame_from_multi.Rd man/create_multi_expressoin_object.Rd man/create_output_df_unique_node.Rd man/denoise_rectangular_matrix.Rd man/filt_fun_enrich.Rd man/flatten_normal_tiss.Rd man/format_results.Rd man/fun_to_app_prep.Rd man/fun_to_int.Rd man/gene_selection.Rd man/gene_selection_surv.Rd man/generate_df_samp_to_node.Rd man/generate_disease_component.Rd man/generate_not_ov_clust.Rd man/get_information_from_results.Rd man/get_intervals_One_D.Rd man/get_lambda.Rd man/get_mu_beta.Rd man/get_omega.Rd man/get_survival_related_genes.Rd man/ggplotColours.Rd man/levels_to_nodes.Rd man/lp_norm_k_powers.Rd man/lp_norm_k_powers_surv.Rd man/map_to_color.Rd man/meta_norm_nobs.Rd man/module_enrichment_analysis.Rd man/one_D_Mapper.Rd man/pData_FRMA.Rd man/percent_table.Rd man/perform_GSVA_dataset.Rd man/perform_wilcoxon_each.Rd man/plot_GSVA.Rd man/plot_genes_by_groups.Rd man/plot_heatmap_data.Rd man/plot_mapper.Rd man/plot_mean_connectivity.Rd man/plot_multiple_graphs.Rd man/plot_scale_free_fit.Rd man/prepare_data_stouffer_p_val.Rd man/prepare_diff_meth_res.Rd man/samples_in_levels.Rd man/select_powers.Rd man/select_powers_aux.Rd man/select_top_diff_genes_groups.Rd man/surivival_analysis_multiple_groups.Rd man/write_results.Rd tests/testthat.R tests/testthat/test_flat_fun.R vignettes/SurvMap-vignette.Rmd