surivival_analysis_multiple_groups: surivival_analysis_multiple_groups

In jfores/SurvMap: Mapper Survival Analysis for Transcriptomic Data

surivival_analysis_multiple_groups

Description

Survival analysis and plottding of the clustering results. https://www.reneshbedre.com/blog/survival-analysis.html

Usage

surivival_analysis_multiple_groups(
  pheno_data,
  out_one_D,
  thr_groups = 50,
  ylim_val = c(0.5, 1),
  xlim_val = c(0, 200),
  type = "node",
  selected_nodes_2 = ""
)

Arguments

pheno_data	data.frame with phenotype data. Must include a columns called pCh_DFS_E, pCh_DFS_T, and pCh_Status including the event, time to relapse, and the status of the sample T: Disease NT: healthy
out_one_D	Mapper output.
thr_groups	Minimum number of samples to include a node in the analysis.
ylim_val	y-axis limits for survival plot.
xlim_val	x-axis limits for survival plot.
type	Divide by node or by pam50 in the latter case a column pam50_frma containing the pam50 classification will be requested.
selected_nodes_2	subset of nodes to compare.

Examples

## Not run: 
surivival_analysis_multiple_groups(pheno_data,out_one_D,thr_groups = 50,ylim_val = c(0.5, 1),xlim_val =  c(0,200),type = "node")

## End(Not run)

jfores/SurvMap documentation built on May 30, 2022, 10:57 p.m.