Man pages for jfores/SurvMap
Mapper Survival Analysis for Transcriptomic Data
| assign_promiscuous_samples | assign_promiscuous_samples |
| aux_function_select_top_diff | aux_function_select_top_diff |
| axuiliar_function_to_mean | axuiliar_function_to_mean |
| block_wise_mod | block_wise_mod |
| clust_all_levels | clust_all_levels |
| clust_lev | clust_lev |
| compute_node_adjacency | compute_node_adjacency |
| compute_power_tables | compute_power_tables |
| compute_u_mat_and_eigen | compute_u_mat_and_eigen |
| cox_all_genes | Survival analysis based on gene expression levels. |
| create_data_frame_from_multi | create_data_frame_from_multi |
| create_multi_expressoin_object | create_multi_expressoin_object |
| create_output_df_unique_node | create_output_df_unique_node |
| denoise_rectangular_matrix | Rectangular matrix denoiser |
| filt_fun_enrich | filt_fun_enrich |
| flatten_normal_tiss | Flatten normal tissues |
| format_results | format_results |
| fun_to_app_prep | fun_to_app_prep |
| fun_to_int | Marcenko-Pastur distribution to integrate. |
| generate_df_samp_to_node | generate_df_samp_to_node |
| generate_disease_component | Generate disease component matrix. |
| generate_not_ov_clust | generate_not_ov_clust |
| gene_selection | Gene selection based on variability |
| gene_selection_surv | gene_selection_surv |
| GEO_Eset_Norm_frma_Collapsed | GEO_Eset_Norm_frma_Collapsed |
| get_information_from_results | get_information_from_results |
| get_intervals_One_D | Extract intervals from filter function output values. |
| get_lambda | Computes lambda |
| get_mu_beta | Get mu_beta |
| get_omega | Compute omega |
| get_survival_related_genes | Gene selector based on association to survival. |
| ggplotColours | Function to get colors like in ggplot2 |
| levels_to_nodes | levels_to_nodes |
| lp_norm_k_powers | PAD Filtering function |
| lp_norm_k_powers_surv | SurvPAD Filtering function |
| map_to_color | map_to_color |
| meta_norm_nobs | meta_norm_nobs |
| module_enrichment_analysis | module_enrichment_analysis |
| one_D_Mapper | one_D_Mapper |
| pData_FRMA | pData_FRMA |
| percent_table | percen_table |
| perform_GSVA_dataset | perform_GSVA_dataset |
| perform_wilcoxon_each | perform_wilcoxon_each |
| plot_genes_by_groups | plot_genes_by_groups |
| plot_GSVA | plot_GSVA |
| plot_heatmap_data | plot_heatmap_data |
| plot_mapper | plot_mapper |
| plot_mean_connectivity | plot_mean_connectivity |
| plot_multiple_graphs | plot_multiple_graphs |
| plot_scale_free_fit | plot_scale_free_fit |
| prepare_data_stouffer_p_val | prepare_data_stouffer_p_val |
| prepare_diff_meth_res | prepare_diff_meth_res |
| samples_in_levels | samples_in_levels |
| select_powers | select_powers |
| select_powers_aux | select_powers_aux |
| select_top_diff_genes_groups | select_top_diff_genes_groups |
| surivival_analysis_multiple_groups | surivival_analysis_multiple_groups |
| SurvMap | SurvMap: A package for computing mapper-based survival... |
| write_results | write_results |
