Man pages for jgodet/trackR
R tools and functions to compute jump analysis, describe and infer from single-molecule tracking data
| calcDist | Compute euclidian distance between 2 points |
| calcMSD | Calculate Mean Square Distance |
| cleanNearest | Do something |
| clusterTraces | cluster traces in space (and/or time) using DBscan |
| createSpheroCylinderCoord | Do something |
| createTestEllipse | Create a test ellipse |
| drawRod | Draw rod contour |
| fitEllipse | Adjust an ellipse on a contour plot |
| fitJumpDistECDF | Do something |
| fitJumpDistHist | Fit jump distribution histogram |
| getContour | Return the convexhull contour of coordinates |
| getEllipse | Create coordinates of an ellipse from fit ellipse parameters |
| histJd | Plot JD histogram |
| jump | Compute jump distance |
| plotDiffusionMap | Plot Diffusion Map |
| plotMSD | Plot MSD |
| readTrackMateXML | read TrackMate XML output files |
| readTrackMateXmlTrace | read TrackMate XML traces output files |
