calcMSD: Calculate Mean Square Distance
In jgodet/trackR: R tools and functions to compute jump analysis, describe and infer from single-molecule tracking data
Description
Usage
Arguments
Author(s)
Examples
Description
Calculate Mean Square Distance
Usage
1
Arguments
data
data frame (including trace, x, y and t)
N
for MSD, dt should be up to 1/N of number of data points (4 recommended)
Author(s)
JuG
Examples
1
2
3
4
5
6
xmlPath <- "//Users/jgodet/Seafile/MaBibliotheque/Hanna/1_3_MMStack_Pos0.ome.xml"
xmlPath <- "/Users/jgodet/Seafile/MaBibliotheque/Code/TrackMate/nmeth.2808-sv1.xml"
data <- readTrackMateXML(XMLpath = xmlPath)
data$jump<-jump(data, spaceRes=1)
msdMat <- calcMSD(data, N=3)
plotMSD(msdMat, col='blue')
jgodet/trackR documentation built on May 24, 2020, 2:21 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Author(s) Examples
Description
Calculate Mean Square Distance
Usage
1 |
Arguments
data |
data frame (including trace, x, y and t) |
N |
for MSD, dt should be up to 1/N of number of data points (4 recommended) |
Author(s)
JuG
Examples
1 2 3 4 5 6 | xmlPath <- "//Users/jgodet/Seafile/MaBibliotheque/Hanna/1_3_MMStack_Pos0.ome.xml"
xmlPath <- "/Users/jgodet/Seafile/MaBibliotheque/Code/TrackMate/nmeth.2808-sv1.xml"
data <- readTrackMateXML(XMLpath = xmlPath)
data$jump<-jump(data, spaceRes=1)
msdMat <- calcMSD(data, N=3)
plotMSD(msdMat, col='blue')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.