plotDiffusionMap: Plot Diffusion Map
In jgodet/trackR: R tools and functions to compute jump analysis, describe and infer from single-molecule tracking data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
View source: R/plotDiffusionMap.r
Description
Plot Diffusion Map
Usage
1
plotDiffusionMap(data, traceNb, nbPix = 20, jumpMax, nbCol = 10)
Arguments
data
data frame (muste contain trace, x, y, and jump)
traceNb
(optional) number id of the traces to plot
nbPix
number of pixel (or calibrated distance) to add on each x-and y-range tail
Details
Plot Diffusion Map or more exactly jump distance map as in Fig 2c of Gasser et al. 2020 doi:10.1017/S0033583519000155
Value
plot
Author(s)
JuG
Examples
1
2
3
4
5
xmlPath <- "/Users/jgodet/Seafile/MaBibliotheque/Code/TrackMate/nmeth.2808-sv1.xml"
data <- readTrackMateXML(XMLpath = xmlPath)
data$jump<-jump(data, spaceRes=1)
plotDiffusionMap(data = data,traceNb = c(12),nbPix = 5 )
plotDiffusionMap(data = data,nbPix = 5 )
jgodet/trackR documentation built on May 24, 2020, 2:21 p.m.
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Description Usage Arguments Details Value Author(s) Examples
View source: R/plotDiffusionMap.r
Description
Plot Diffusion Map
Usage
1 | plotDiffusionMap(data, traceNb, nbPix = 20, jumpMax, nbCol = 10)
|
Arguments
data |
data frame (muste contain trace, x, y, and jump) |
traceNb |
(optional) number id of the traces to plot |
nbPix |
number of pixel (or calibrated distance) to add on each x-and y-range tail |
Details
Plot Diffusion Map or more exactly jump distance map as in Fig 2c of Gasser et al. 2020 doi:10.1017/S0033583519000155
Value
plot
Author(s)
JuG
Examples
1 2 3 4 5 | xmlPath <- "/Users/jgodet/Seafile/MaBibliotheque/Code/TrackMate/nmeth.2808-sv1.xml"
data <- readTrackMateXML(XMLpath = xmlPath)
data$jump<-jump(data, spaceRes=1)
plotDiffusionMap(data = data,traceNb = c(12),nbPix = 5 )
plotDiffusionMap(data = data,nbPix = 5 )
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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