fitJumpDistECDF: Do something

In jgodet/trackR: R tools and functions to compute jump analysis, describe and infer from single-molecule tracking data

Description

Do something

Usage

fitJumpDistECDF(
  data,
  nbPop = 1,
  initECDF = list(D1 = 0.05),
  timeRes = 1,
  xlab,
  ylab,
  main,
  cex,
  colLine = "red",
  breaks = 150,
  ...
)

Arguments

data	dataframe with jump
nbPop	number of populations of diffusing species (1 or 2)
timeRes	time resolution per unit of jump
initHist	initialisation parameters for the nls fit for exmaple list(D2 = 200, D1=0.1) or list(D2 = .01, D1=.1, D3=10, D4=100)

Author(s)

JuG

Examples

xmlPath <- "/Users/jgodet/Seafile/MaBibliotheque/Code/TrackMate/nmeth.2808-sv1.xml"
xmlPath <- "/Users/jgodet/Seafile/MaBibliotheque/Code/TrackMate/nmeth.2808-sv3.xml"
data <- readTrackMateXML(XMLpath = xmlPath)
data$jump<-jump(data, spaceRes=1)
fitJumpDistECDF(data=data, nbPop = 1)
fitJumpDistECDF(data=data, nbPop = 1, cex=.85, colLine = 'green')
fitJumpDistECDF(data=data, nbPop = 2,  initECDF = list(D1=0.001, D2=.4, D3=.1), cex=.85, colLine = 'green')

jgodet/trackR documentation built on May 24, 2020, 2:21 p.m.