read.VCF: Reads a VCF file into a BED object
In jgx65/hierfstat: Estimation and Tests of Hierarchical F-Statistics
read.VCF R Documentation
Reads a VCF file into a BED object
Description
Reads a https://samtools.github.io/hts-specs/Variant Call Format (VCF) file into a BED object,
retaining bi-allelic SNPs only
Usage
read.VCF(fname,BiAllelic=TRUE,...)
Arguments
fname
VCF file name. The VCF file can be compressed (VCF.gz)
BiAllelic
Logical. If TRUE, only bi-allelic SNPs are retained,
otherwise, all variant are kept
...
other arguments to pass to the function
Value
A bed.matrix-class object
See Also
read.vcf
Examples
filepath <-system.file("extdata", "LCT.vcf.gz", package="gaston")
x1 <- read.VCF( filepath )
x1
jgx65/hierfstat documentation built on April 20, 2023, 8:34 a.m.
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| read.VCF | R Documentation |
Reads a VCF file into a BED object
Description
Reads a https://samtools.github.io/hts-specs/Variant Call Format (VCF) file into a BED object, retaining bi-allelic SNPs only
Usage
read.VCF(fname,BiAllelic=TRUE,...)
Arguments
fname |
VCF file name. The VCF file can be compressed (VCF.gz) |
BiAllelic |
Logical. If TRUE, only bi-allelic SNPs are retained, otherwise, all variant are kept |
... |
other arguments to pass to the function |
Value
A bed.matrix-class object
See Also
read.vcf
Examples
filepath <-system.file("extdata", "LCT.vcf.gz", package="gaston")
x1 <- read.VCF( filepath )
x1
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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