theta.Watt.dosage | R Documentation |
\theta_{Watterson}
from dosage dataEstimates \theta_{Watterson}=S/a
, where S
is the number of segregating sites
in a set of sequences and a=1/\sum_i^{n-1} i
.
theta.Watt.dosage(dos,L=NULL)
dos |
a ni X nl dosage matrix containing the number of derived/alternate alleles each individual carries at each SNP |
L |
the length of the sequence |
if L=NULL
(default), returns \theta_{Watterson}
, else return \theta_{Watterson}/L
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