Man pages for jhart99/gseasier
Run the GSEA java pacakage from inside R
| compare.sigs | Compares sparse matrixes of gene signatures |
| convert.sigs.to.matrix | Converts signatures into a sparse matrix |
| ES | Enrichment score |
| ES.plot | Enrichment set plot |
| FES | FES |
| FES.plot | FES plot |
| FES.plot.vs | Title |
| FES.summary | Title |
| FES.table | Title |
| filter.cpm | Title |
| find.gsea.results | Title |
| GSEA.java.exec | Title |
| gsea.pkg.env | Title |
| GSEA.preranked.java.exec | Title |
| hello | Hello, World! |
| jitter.sn | Title |
| leading.edge | Title |
| leading.edge.heatmap | Title |
| loadSig | Loads signatures from GMT formatted files from msigdb |
| noise.rank | Title |
| ragged.list.melt | Title |
| read.cls | Title |
| read.gct | Title |
| read.gsea.results | Title |
| s2n.rank | Title |
| s2n.score | Title |
| write.cls | Title |
| write.gct | Title |
| write.gmt | Title |
| z.rank | Title |
| z.ratio | Title |
