| aee | Ancestral Transcriptome State Inference |
| AnceTran | AnceTran: the package for comparative phylogenetic analysis... |
| distances | Internal functions for estimating pair-wise transcriptome... |
| Exptab | Expression level table extracted from a 'taxaExp' class |
| nj | Neighbor-joining tree |
| no0br | No zero branch length |
| tExpConstruct | Construct a taxaExp object |
| TF.objects | taxaTF object created from HNF4A binding data for 4 mice... |
| TFtab | TF-binding score table extracted from a 'taxaTF' class |
| tTFConstruct | Constrct a taxaTF object |
| varMatInv | Generate an inversed variance-covariance matrix from... |
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