filter.breakdancer: Illustrative funtion to filter Breakdancer calls.
In jjellis/GenomicVis: Genomic Visualisation Routines

Description Usage Arguments Value Author(s)

This function is an example of filtering Breakdancer calls that have been read with read.breakdancer. It is illustrative only, and not intended to necessarily represent the best way to filter Breakdancer calls.

1 2	filter.breakdancer(sv, minTumour = 10, maxNormal = 4, minRatio = 5, chr = NA, conf = 95)

`sv`	A `data.frame` typically the returned value from `read.breakdancer`
`minTumour`	minimum number of reads supporting SV in the tumour sample.
`maxNormal`	maximum number of reads supporting SV in the normal sample.
`minRatio`	minimum ration between supporting reads in the tumour / normal.
`chr`	Chromosome to process
`conf`	Minimum confidence (score) required.