summarise.mutations: Summarise the types of mutations in a region of kataegis.

Description Usage Arguments Value Author(s) Examples

Description

Summarise the types of mutations in a region of kataegis.

Usage

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summarise.mutations(x, pos = 1)

Arguments

x

a kataegisList object, usually created by kataegis.

pos

the index of the kataegis region in x to summarise.

Value

returns a contingency table summarising the types of mutation found in the specified region of kataegis.

Author(s)

Jonathan Ellis <jonathan.j.ellis@gmail.com>

Examples

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## Not run: 
x <- kataegis(system.file('extdata', 'example.vcf', package = 'GenomicVis')

## End(Not run)
data(KataegisExample)
summarise.mutations(KataegisExample, pos = 2)

jjellis/GenomicVis documentation built on May 19, 2019, 11:39 a.m.