summarise.mutations: Summarise the types of mutations in a region of kataegis.
In jjellis/GenomicVis: Genomic Visualisation Routines
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Summarise the types of mutations in a region of kataegis.
Usage
1
summarise.mutations(x, pos = 1)
Arguments
x
a kataegisList object, usually created by kataegis.
pos
the index of the kataegis region in x to summarise.
Value
returns a contingency table summarising the types of mutation found
in the specified region of kataegis.
Author(s)
Jonathan Ellis <jonathan.j.ellis@gmail.com>
Examples
1
2
3
4
5
6
## Not run:
x <- kataegis(system.file('extdata', 'example.vcf', package = 'GenomicVis')
## End(Not run)
data(KataegisExample)
summarise.mutations(KataegisExample, pos = 2)
jjellis/GenomicVis documentation built on May 19, 2019, 11:39 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Summarise the types of mutations in a region of kataegis.
Usage
1 | summarise.mutations(x, pos = 1)
|
Arguments
x |
a |
pos |
the index of the kataegis region in |
Value
returns a contingency table summarising the types of mutation found in the specified region of kataegis.
Author(s)
Jonathan Ellis <jonathan.j.ellis@gmail.com>
Examples
1 2 3 4 5 6 | ## Not run:
x <- kataegis(system.file('extdata', 'example.vcf', package = 'GenomicVis')
## End(Not run)
data(KataegisExample)
summarise.mutations(KataegisExample, pos = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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