Files in jjellis/GenomicVis
Genomic Visualisation Routines

DESCRIPTION
NAMESPACE
R/GenomicVis-package.R R/PlotBAF.R R/PlotCNA.R R/PlotLRR.R R/PlotSV.R R/chromosome.palette.R R/cnv.heatmap.R R/cnv.merge.R R/cnv.plot.R R/default.cnv.heatmap.colour.map.R R/filter.breakdancer.R R/find.kataegis.R R/find.kataegis.helper.R R/find.kataegis.pcf.R R/find.kataegis.pcf.helper.R R/gap2cnv.R R/genes.in.region.R R/genomic.distance.R R/get.segments.R R/heatmap.categorical.R R/kataegis.R R/kataegis.colours.R R/list.vcffiles.R R/plot.kataegisList.R R/plotKataegis.R R/plotSNVHeatmap.R R/prepare.data.R R/print.kataegisList.R R/read.breakdancer.R R/read.gap.R R/read.illumina.R R/read.snpeff.vcf.R R/read.snpeff.vcfs.R R/read.vcf.R R/reduceWithin.R R/snv.clustering.R R/snv.heatmap.R R/summarise.mutations.R R/vcf.venn.R README.md
build/vignette.rds
data/CNVData.rda
data/CNVExample.rda
data/KataegisExample.rda
data/SNPExample.rda
data/SVExample.rda
data/datalist
data/hg19Genes.rda
inst/doc/GenomicVis.R
inst/doc/GenomicVis.Rnw
inst/doc/GenomicVis.pdf
inst/extdata/CN_BA_Illumina_MySeries.chr18.txt
inst/extdata/Illum660K_annot_cut.chr18.csv
inst/extdata/LC1_A.snpeff.vcf
inst/extdata/LC1_B.snpeff.vcf
inst/extdata/LC1_C.snpeff.vcf
inst/extdata/LC1_D.snpeff.vcf
inst/extdata/LC1_TUMOUR_A.vcf
inst/extdata/LC1_TUMOUR_B.vcf
inst/extdata/LC2_TUMOUR_A.vcf
inst/extdata/LC2_TUMOUR_B.vcf
inst/extdata/LC3_BLOOD_TUMOUR_C.chr18.txt
inst/extdata/LC3_TUMOUR_A.vcf
inst/extdata/LC3_TUMOUR_B.vcf
inst/extdata/LC3_TUMOUR_C_FinalReport.chr18.txt
inst/extdata/example.vcf
man/CNVData.Rd man/CNVExample.Rd man/GenomicVis.Rd man/KataegisExample.Rd man/SNPExample.Rd man/SVExample.Rd man/cnv.heatmap.Rd man/cnv.merge.Rd man/cnv.plot.Rd man/default.cnv.heatmap.colour.map.Rd man/filter.breakdancer.Rd man/gap2cnv.Rd man/genes.in.region.Rd man/hg19Genes.Rd man/kataegis.Rd man/kataegis.colours.Rd man/list.vcffiles.Rd man/plot.kataegisList.Rd man/plotKataegis.Rd man/prepare.data.Rd man/print.kataegisList.Rd man/read.breakdancer.Rd man/read.gap.Rd man/read.illumina.Rd man/read.snpeff.vcf.Rd man/read.snpeff.vcfs.Rd man/read.vcf.Rd man/snv.clustering.Rd man/snv.heatmap.Rd man/summarise.mutations.Rd man/vcf.venn.Rd
vignettes/GenomicVis.Rnw
vignettes/cnvPlot.pdf vignettes/venn.pdf
jjellis/GenomicVis documentation built on May 17, 2017, 10:23 p.m.