Files in jkruppa/acgtPyramid
kmerPyramid: an interactive visualization tool for nucleobase and \textit{k}-mer frequencies
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/get_diff_values.R
R/get_pca_plot_list.R
R/get_pca_window_list.R
R/get_window_distr.R
R/kmer_distribution.R
R/pyramid_3d.R
R/pyramid_3d_draw_edges.R
R/pyramid_3d_grid.R
R/utility.R
README.md
data/bacteriaKmerDistribution.rda
data/viralExampleCodingSeq.rda
data/viralExampleSeqs.rda
data/virus.fa
data/virusKmerDistribution.rda
img/animated_pyramide.gif
img/kmerPlot.png
img/pyramid_3d_example0.PNG
img/pyramid_3d_example1.PNG
img/pyramid_3d_example2.PNG
img/pyramid_3d_example3.PNG
img/pyramid_3d_example4.PNG
img/pyramid_3d_example5.PNG
img/tutorial_img_1.PNG
kmerPyramid.Rproj
man/bacteriaKmerDistribution.Rd
man/generate_paired_reads.Rd
man/get_diff_values.Rd
man/get_kmer_distribution.Rd
man/get_pca_plot_list.Rd
man/get_pca_window_list.Rd
man/get_reads_num.Rd
man/get_window_distr.Rd
man/pyramid_3d.Rd
man/pyramid_3d_draw_edges.Rd
man/pyramid_3d_grid.Rd
man/read.fastq.Rd
man/translate.phred.Rd
man/viralExampleCodingSeq.Rd
man/viralExampleSeqs.Rd
man/virusKmerDistribution.Rd
