bacteriaKmerDistribution: k-mer distribution of bacteria DNA sequences
In jkruppa/acgtPyramid: kmerPyramid: an interactive visualization tool for nucleobase and \textit{k}-mer frequencies
Description
Usage
Format
Source
Description
A dataset containing the 1, 2, 3, 4, and 5-mer
distribution of the nucleic acid bases of bacteria available as
embl files from NCBI.
Usage
1
Format
A data frame with 2000+ rows and 1365 variables:
- id
Name of the bacteria (NCBI)
- type
Type of the bacteria
- species
Species of the bacteria
- A
Percentage of nucleic acid base A in the 1-mers
- ...
...
- TTTTT
Percentage of nucleic acid mer TTTTT in the 5-mers
Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99098/
jkruppa/acgtPyramid documentation built on May 19, 2019, 12:45 p.m.
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Description Usage Format Source
Description
A dataset containing the 1, 2, 3, 4, and 5-mer distribution of the nucleic acid bases of bacteria available as embl files from NCBI.
Usage
1 |
Format
A data frame with 2000+ rows and 1365 variables:
- id
Name of the bacteria (NCBI)
- type
Type of the bacteria
- species
Species of the bacteria
- A
Percentage of nucleic acid base A in the 1-mers
- ...
...
- TTTTT
Percentage of nucleic acid mer TTTTT in the 5-mers
Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99098/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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