Man pages for jkruppa/acgtPyramid
kmerPyramid: an interactive visualization tool for nucleobase and \textit{k}-mer frequencies
| bacteriaKmerDistribution | k-mer distribution of bacteria DNA sequences |
| generate_paired_reads | Generate paired reads from a given genome |
| get_diff_values | Get the difference in counts between to sequences |
| get_kmer_distribution | Get the k-mer distribution from a sequence |
| get_pca_plot_list | Calculate the PCA with pyramid edges |
| get_pca_window_list | Get the PCA values for sliding window |
| get_reads_num | Calculate number of reads given the coverage and genome size |
| get_window_distr | Wrapper for the sliding window k-mer distribution |
| pyramid_3d | ACGT pyramid 3D ploting function |
| pyramid_3d_draw_edges | Function to draw the edges of the 3D pyramid |
| pyramid_3d_grid | The k-mer grid pyramid 3D plotting function |
| read.fastq | Function to read in fastq files |
| translate.phred | Test title for later |
| viralExampleCodingSeq | DNAStringSet of coding and non coding of NC_015230.1 viral... |
| viralExampleSeqs | DNAStringSet of ten viral sequences |
| virusKmerDistribution | k-mer distribution of virus DNA sequences |
