API for jlab-code/jDMR
A heuristic DMR caller for large-scale WGBS data
| Global functions | |
|---|---|
| CfromFASTAv4 | Man page Source code |
| CfromFASTAv5 | Source code |
| DMR.list.out | Source code |
| MethimputeRegTobedGraph.rcmethlvl | Source code |
| MethimputeRegTobedGraph.stateCalls | Source code |
| annotate | Source code |
| annotateDMRs | Man page Source code |
| binGenome | Source code |
| context.specific.DMRs | Source code |
| export.bins | Source code |
| export.out | Source code |
| extract.context.DMRs | Source code |
| extractCytclusters | Source code |
| filterDMRmatrix | Man page Source code |
| filterEpiMAF | Source code |
| filterReplicateConsensus | Source code |
| floorDec | Source code |
| gff3.in | Source code |
| gff3.out | Source code |
| makeDMRmatrix | Man page Source code |
| makeMethimpute | Source code |
| makeReg | Man page Source code Source code |
| makeRegionsImpute | Source code |
| merge.bins | Source code |
| merge.cols | Source code |
| modified.estimateTransDist | Source code |
| modifiedExportMethylome | Source code |
| runjDMRgrid | Man page Source code |
| runjDMRregions | Man page Source code |
| split.groups | Source code |
| statusStringCheck | Source code |
| write.out | Source code |
