makeReg: Generates cytosine clusters in genome

In jlab-code/jDMR: A heuristic DMR caller for large-scale WGBS data

Generates cytosine clusters in genome

Description

Uses the extracted cytosines from CfromFASTA and finds clsuters of cytosines along the genome.

Usage

makeReg(
  ref.genome,
  contexts,
  chr,
  min.C,
  N.boot,
  N.sim.C,
  fp.rate,
  set.tol,
  out.dir,
  out.name,
  makeRegnull
)

jlab-code/jDMR documentation built on April 23, 2022, 11:02 a.m.