Files in jlab-code/jDMR
A heuristic DMR caller for large-scale WGBS data
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/.Rhistory
R/CfromFASTAv4.R
R/CfromFASTAv5.R
R/annotateDMRs.R
R/filterDMRmatrix.R
R/globFun.R
R/jDMRReg.R
R/jDMRRegTobedGraph.R
R/makeDMRmatrix.R
R/makeReg.R
R/makeRegScaffolds.R
R/runjDMR.R
README.md
inst/extdata/Run_script_jDMR.R
inst/extdata/TAIR10_chr_all.fa.zip
inst/extdata/listFiles1.fn
inst/extdata/listFiles2.fn
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr1_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr2_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr3_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr4_CHH.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_C.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_CG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_CHG.Rdata
inst/extdata/min.C_5/fp0.01/Arabidopsis_regions_chr5_CHH.Rdata
man/CfromFASTAv4.Rd
man/annotateDMRs.Rd
man/filterDMRmatrix.Rd
man/makeDMRmatrix.Rd
man/makeReg.Rd
man/runjDMRgrid.Rd
man/runjDMRregions.Rd
vignettes/.Rhistory
vignettes/jDMR-tutorial.Rmd
vignettes/jDMR-tutorial.pdf
