annotateDMRs | Annotate DMRs |
CfromFASTAv4 | Extract cytosines from FASTA |
filterDMRmatrix | filter DMR matrix |
makeDMRmatrix | Builds a DMR matrix for all samples |
makeReg | Generates cytosine clusters in genome |
runjDMRgrid | Run jDMR on binned genome |
runjDMRregions | Run jDMR for Regions |
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