R/data.R

In jleechung/schelpers: Helper functions for single cell RNA-seq analyses with Seurat

#' Reference panel from https://elifesciences.org/articles/43882
#' 
#' Differentially expressed genes across TIP sub-populations.
#' Supplementary file 2: elife-43882-supp1-v2.xlsx
#'
#' @format A data frame with 17018 rows and 6 variables:
#' Gene, pct expressed, adjusted p value, log fold change, and cell type 
#'  
#' @source \url{https://doi.org/10.7554/eLife.43882.035}
"ref"

#' Ensembl gene, transcript and common gene name map based on GENCODE vM27
#' 
#'
#' @format A data frame with 142375 rows and 3 columns
#' Ensembl gene id, ensembl transcript id and common gene name 
#'  
#' @source \url{http://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M27/gencode.vM27.annotation.gtf.gz}
"gencode.vM27.annotation.map"