API for jlmelville/sneer
Stochastic Neighbor Embedding Experiments in R
| Global functions | |
|---|---|
| after_init | Source code |
| asne | Source code |
| asne_stiffness | Source code |
| asne_stiffness_fn | Source code |
| asymm_weights_to_pjoint | Source code |
| auc_mat | Source code |
| before_init | Source code |
| beta_to_bandwidth | Source code |
| bnx_crm | Source code |
| calculate_cost | Source code |
| calculate_importance | Source code |
| center_columns | Source code |
| center_matrix | Source code |
| centralities | Source code |
| centrality | Source code |
| check_symmetry | Source code |
| clamp | Source code |
| color_brewer_palette | Source code |
| color_helper | Source code |
| color_helper_column | Source code |
| color_helper_df | Source code |
| coords_to_dist2 | Source code |
| coranking_matrix | Source code |
| cost_gradient_fd | Source code |
| create_keep | Source code |
| d2_transform | Source code |
| d_to_p_perp_bisect | Source code |
| dasne | Source code |
| ddhssne | Source code |
| degree_centrality | Source code |
| dh3sne | Source code |
| dhasne | Source code |
| dhpsne | Source code |
| dhssne | Source code |
| dihasne | Source code |
| dihssne | Source code |
| dist2_gradient | Source code |
| dist2_to_weights | Source code |
| dist_embedder | Source code |
| dist_gradient | Source code |
| distance_matrix | Source code |
| distance_stiffness | Source code |
| distance_stiffness_fn | Source code |
| dot | Source code |
| dssne | Source code |
| dynamize_exp_kernel | Source code |
| dynamize_heavy_tail_kernel | Source code |
| dynamize_inhomogeneous_kernel | Source code |
| early_exaggeration | Source code |
| embed_dist | Source code |
| embed_main | Source code |
| embed_plot | Man page Source code |
| embed_plotly | Man page Source code |
| embed_prob | Source code |
| embedder | Man page Source code |
| exp_cost_gr_param_kl_asymm | Source code |
| exp_cost_gr_param_kl_symm | Source code |
| exp_cost_gr_param_plugin | Source code |
| exp_gr | Source code |
| exp_gr_param | Source code |
| exp_kernel | Source code |
| exp_weight | Source code |
| factor_to_colors | Source code |
| filter_column_names | Source code |
| find_beta | Source code |
| generic_gradient | Source code |
| gradient_fd | Source code |
| handle_prob | Source code |
| hasne | Source code |
| heavy_tail_cost_gr_alpha_kl_asymm | Source code |
| heavy_tail_cost_gr_alpha_kl_symm | Source code |
| heavy_tail_cost_gr_alpha_plugin | Source code |
| heavy_tail_cost_gr_beta_kl_asymm | Source code |
| heavy_tail_cost_gr_beta_kl_symm | Source code |
| heavy_tail_cost_gr_beta_plugin | Source code |
| heavy_tail_gr | Source code |
| heavy_tail_gr_alpha | Source code |
| heavy_tail_gr_beta | Source code |
| heavy_tail_gr_param_xi | Source code |
| heavy_tail_kernel | Source code |
| heavy_tail_params | Source code |
| heavy_tail_params_xi | Source code |
| heavy_tail_weight | Source code |
| hpsne | Source code |
| hsjse | Source code |
| hsjse_stiffness | Source code |
| hsjse_stiffness_fn | Source code |
| hsnerv | Source code |
| hsnerv_stiffness | Source code |
| hsnerv_stiffness_fn | Source code |
| hssne | Source code |
| hssne_stiffness | Source code |
| hssne_stiffness_fn | Source code |
| htsne | Source code |
| htssne | Source code |
| iasne | Source code |
| identity_weight | Source code |
| iembed | Source code |
| ih3sne | Source code |
| ihasne | Source code |
| ihpsne | Source code |
| ihssne | Source code |
| imp_kernel | Source code |
| imp_weight_method | Source code |
| improve_guess | Source code |
| indegree_centrality | Source code |
| init_embed | Source code |
| init_out | Source code |
| inp_from_dint_max | Source code |
| inp_from_perp | Source code |
| inp_from_perps_multi | Source code |
| inp_from_perps_multil | Source code |
| inp_from_step_perp | Source code |
| inp_prob | Source code |
| inp_updated | Source code |
| intrinsic_dimensionality | Source code |
| intrinsic_dimensionality_fd | Source code |
| is_asymmetric_kernel | Source code |
| is_color | Source code |
| is_color_column | Source code |
| is_enforced_joint_out_prob | Source code |
| is_fully_symmetric_embedding | Source code |
| is_joint_out_prob | Source code |
| is_symmetric_kernel | Source code |
| issne | Source code |
| it3sne | Source code |
| itsne | Source code |
| itsne_cost_gr_param | Source code |
| itsne_cost_gr_param_asymm | Source code |
| itsne_cost_gr_param_plugin | Source code |
| itsne_gr | Source code |
| itsne_gr_param | Source code |
| itsne_kernel | Source code |
| itsne_weight | Source code |
| itssne | Source code |
| js_mixture | Source code |
| jse | Source code |
| jse_cost | Source code |
| jse_cost_gr | Source code |
| jse_cost_norm | Source code |
| jse_cost_point | Source code |
| jse_divergence | Source code |
| jse_divergence_point | Source code |
| jse_fg | Source code |
| jse_inp_update | Source code |
| jse_stiffness | Source code |
| jse_stiffness_fn | Source code |
| k_largest_ind | Source code |
| k_shared_nbrs_ind | Source code |
| k_smallest_ind | Source code |
| kernel_gr_fd | Source code |
| kl_cost | Source code |
| kl_cost_gr | Source code |
| kl_cost_point | Source code |
| kl_divergence | Source code |
| kl_divergence_gr | Source code |
| kl_divergence_point | Source code |
| kl_divergence_rows | Source code |
| kl_fg | Source code |
| klqp_update | Source code |
| klqp_update_pjoint | Source code |
| klqp_update_prow | Source code |
| klqz_update | Source code |
| klqz_update_pjoint | Source code |
| klqz_update_prow | Source code |
| kruskal_stress | Source code |
| kruskal_stress_cost | Source code |
| last_color_column_name | Source code |
| last_factor_column_name | Source code |
| lconcat | Source code |
| length_vec | Source code |
| lreplace | Source code |
| make_color_brewer_ramp | Source code |
| make_embedding_plot | Source code |
| make_embedding_qplot | Source code |
| make_final_reporter | Source code |
| make_kernel_dynamic | Source code |
| make_label | Source code |
| make_normalized_cost_fn | Source code |
| make_objective_fn | Source code |
| make_optim_alt_fg | Source code |
| make_optim_coord_fg | Source code |
| make_optim_fg | Source code |
| make_palette | Source code |
| make_plot | Source code |
| make_preprocess | Source code |
| make_qplot | Source code |
| make_quality_reporter | Source code |
| make_reporter | Source code |
| make_tricks | Source code |
| mat_to_par | Source code |
| max_scale_columns | Source code |
| max_scale_matrix | Source code |
| mean_relative_error | Source code |
| mean_relative_error_cost | Source code |
| metric_sstress | Source code |
| metric_sstress_cost | Source code |
| metric_sstress_cost_gr | Source code |
| metric_sstress_cost_point | Source code |
| metric_sstress_fg | Source code |
| metric_sstress_point | Source code |
| metric_stress | Source code |
| metric_stress_cost | Source code |
| metric_stress_cost_gr | Source code |
| metric_stress_cost_point | Source code |
| metric_stress_fg | Source code |
| metric_stress_point | Source code |
| mize | Source code |
| mize_back_nag | Source code |
| mize_back_nag_adapt | Source code |
| mize_bfgs | Source code |
| mize_bold_nag | Source code |
| mize_bold_nag_adapt | Source code |
| mize_grad_descent | Source code |
| mize_opt | Source code |
| mize_opt_alt | Source code |
| mize_opt_alt_step | Source code |
| mize_opt_step | Source code |
| mmds | Source code |
| mmds_stiffness | Source code |
| mmds_stiffness_fn | Source code |
| ms_perps | Source code |
| ms_wrap_in_updated | Source code |
| nbr_pres | Man page Source code |
| nbr_pres_i | Source code |
| nerv | Source code |
| nerv_cost | Source code |
| nerv_cost_gr | Source code |
| nerv_cost_point | Source code |
| nerv_fg | Source code |
| nerv_stiffness | Source code |
| nerv_stiffness_fn | Source code |
| nn_graph | Source code |
| no_kernel | Source code |
| no_transform | Source code |
| normalize | Source code |
| normalized_stress | Source code |
| normalized_stress_cost | Source code |
| null_model_dist | Source code |
| null_model_prob | Source code |
| null_model_weight | Source code |
| numeric_to_colors | Source code |
| on_inp_updated | Source code |
| opt_sneer | Source code |
| optimize_stiffness | Source code |
| out_from_PCA | Source code |
| out_from_matrix | Source code |
| out_from_rnorm | Source code |
| out_from_runif | Source code |
| out_from_scaled_PCA | Source code |
| out_updated | Source code |
| outdegree_centrality | Source code |
| par_to_out | Source code |
| param_gr | Source code |
| param_stiffness_norm | Source code |
| partial | Source code |
| perplexity_rows | Source code |
| plugin_stiffness | Source code |
| plugin_stiffness_cond | Source code |
| plugin_stiffness_fn | Source code |
| plugin_stiffness_joint | Source code |
| plugin_stiffness_ms | Source code |
| plugin_stiffness_ms_cond | Source code |
| plugin_stiffness_ms_fn | Source code |
| plugin_stiffness_ms_joint | Source code |
| plugin_stiffness_ms_pair | Source code |
| plugin_stiffness_ms_row | Source code |
| plugin_stiffness_pair | Source code |
| plugin_stiffness_row | Source code |
| plugin_stiffness_un | Source code |
| pr_auc | Source code |
| pr_auc_embed | Man page Source code |
| pr_auc_row | Source code |
| prob_embedder | Source code |
| process_color_options | Source code |
| promote_input_matrix | Source code |
| prow_to_pavrow | Source code |
| prow_to_pcond | Source code |
| prow_to_pjoint | Source code |
| psne | Source code |
| qnx_crm | Source code |
| random_matrix_norm | Source code |
| random_matrix_unif | Source code |
| range_scale_columns | Source code |
| range_scale_matrix | Source code |
| rasne | Source code |
| reltol | Source code |
| remove_nulls | Source code |
| restart_if_possible | Source code |
| reverse_asne_stiffness | Source code |
| reverse_asne_stiffness_fn | Source code |
| reverse_hssne_stiffness | Source code |
| reverse_hssne_stiffness_fn | Source code |
| reverse_kl_cost | Source code |
| reverse_kl_cost_gr | Source code |
| reverse_kl_cost_point | Source code |
| reverse_kl_divergence_gr | Source code |
| reverse_kl_divergence_point | Source code |
| reverse_kl_fg | Source code |
| reverse_ssne_stiffness | Source code |
| reverse_ssne_stiffness_fn | Source code |
| reverse_tsne_stiffness | Source code |
| reverse_tsne_stiffness_fn | Source code |
| reverse_unkl_cost | Source code |
| reverse_unkl_fg | Source code |
| rms_metric_stress | Source code |
| rms_metric_stress_cost | Source code |
| rnx_auc | Source code |
| rnx_auc_crm | Source code |
| rnx_auc_embed | Man page Source code |
| rnx_crm | Source code |
| roc_auc | Source code |
| roc_auc_embed | Man page Source code |
| roc_auc_row | Source code |
| root_bisect | Source code |
| rssne | Source code |
| rtsne | Source code |
| s1k | Man page |
| sammon_fg | Source code |
| sammon_map | Source code |
| sammon_stiffness | Source code |
| sammon_stiffness_fn | Source code |
| sammon_stress | Source code |
| sammon_stress_cost | Source code |
| sammon_stress_cost_gr | Source code |
| sammon_stress_cost_point | Source code |
| sammon_stress_point | Source code |
| sammon_stress_unnorm | Source code |
| sammon_stress_unnorm_cost | Source code |
| scale_distances | Source code |
| scale_prec_to_perp | Source code |
| scatterqplot | Source code |
| sclamp | Source code |
| scores_matrix | Source code |
| scores_plot | Source code |
| scores_qplot | Source code |
| sd_scale_columns | Source code |
| sd_scale_matrix | Source code |
| set_heavy_tail_params_xi | Source code |
| set_kernel_asymmetric | Source code |
| set_solution | Source code |
| shannon_entropy_rows | Source code |
| should_update | Source code |
| single_perplexity | Source code |
| sjse | Source code |
| sjse_stiffness | Source code |
| sjse_stiffness_fn | Source code |
| smmds | Source code |
| smmds_stiffness | Source code |
| smmds_stiffness_fn | Source code |
| sneer | Man page Man page Source code |
| sneer-package | Man page |
| snerv | Source code |
| snerv_stiffness | Source code |
| snerv_stiffness_fn | Source code |
| sqrt_exp_weight | Source code |
| ssne | Source code |
| ssne_stiffness | Source code |
| ssne_stiffness_fn | Source code |
| step_perps | Source code |
| step_weight | Source code |
| stiff_to_grads | Source code |
| stiffness | Source code |
| sum2_cost | Source code |
| sum2_fg | Source code |
| summarize | Source code |
| summarize_betas | Source code |
| symmetrize_matrix | Source code |
| tasne | Source code |
| tasne_stiffness | Source code |
| tasne_stiffness_fn | Source code |
| tdist_gr | Source code |
| tdist_kernel | Source code |
| tdist_weight | Source code |
| tnerv | Source code |
| tnerv_stiffness | Source code |
| tnerv_stiffness_fn | Source code |
| tpsne | Source code |
| transfer_kernel_precisions | Source code |
| tsne | Source code |
| tsne_stiffness | Source code |
| tsne_stiffness_fn | Source code |
| tsne_tricks | Source code |
| undirty | Source code |
| unkl_cost | Source code |
| unkl_divergence | Source code |
| unkl_fg | Source code |
| unnerv_cost | Source code |
| unnerv_fg | Source code |
| update_dist | Source code |
| update_out | Source code |
| update_out_if_necessary | Source code |
| update_out_prob | Source code |
| update_out_prob_ms | Source code |
| update_probs | Source code |
| upper_tri | Source code |
| varfilter | Source code |
| vec_formatC | Source code |
| weights_to_pcond | Source code |
| weights_to_probs | Source code |
| weights_to_prow | Source code |
| weights_to_pun | Source code |
| whiten | Source code |
| z_update | Source code |
