API for jlmelville/sneer
Stochastic Neighbor Embedding Experiments in R

Global functions
after_init Source code
asne Source code
asne_stiffness Source code
asne_stiffness_fn Source code
asymm_weights_to_pjoint Source code
auc_mat Source code
before_init Source code
beta_to_bandwidth Source code
bnx_crm Source code
calculate_cost Source code
calculate_importance Source code
center_columns Source code
center_matrix Source code
centralities Source code
centrality Source code
check_symmetry Source code
clamp Source code
color_brewer_palette Source code
color_helper Source code
color_helper_column Source code
color_helper_df Source code
coords_to_dist2 Source code
coranking_matrix Source code
cost_gradient_fd Source code
create_keep Source code
d2_transform Source code
d_to_p_perp_bisect Source code
dasne Source code
ddhssne Source code
degree_centrality Source code
dh3sne Source code
dhasne Source code
dhpsne Source code
dhssne Source code
dihasne Source code
dihssne Source code
dist2_gradient Source code
dist2_to_weights Source code
dist_embedder Source code
dist_gradient Source code
distance_matrix Source code
distance_stiffness Source code
distance_stiffness_fn Source code
dot Source code
dssne Source code
dynamize_exp_kernel Source code
dynamize_heavy_tail_kernel Source code
dynamize_inhomogeneous_kernel Source code
early_exaggeration Source code
embed_dist Source code
embed_main Source code
embed_plot Man page Source code
embed_plotly Man page Source code
embed_prob Source code
embedder Man page Source code
exp_cost_gr_param_kl_asymm Source code
exp_cost_gr_param_kl_symm Source code
exp_cost_gr_param_plugin Source code
exp_gr Source code
exp_gr_param Source code
exp_kernel Source code
exp_weight Source code
factor_to_colors Source code
filter_column_names Source code
find_beta Source code
generic_gradient Source code
gradient_fd Source code
handle_prob Source code
hasne Source code
heavy_tail_cost_gr_alpha_kl_asymm Source code
heavy_tail_cost_gr_alpha_kl_symm Source code
heavy_tail_cost_gr_alpha_plugin Source code
heavy_tail_cost_gr_beta_kl_asymm Source code
heavy_tail_cost_gr_beta_kl_symm Source code
heavy_tail_cost_gr_beta_plugin Source code
heavy_tail_gr Source code
heavy_tail_gr_alpha Source code
heavy_tail_gr_beta Source code
heavy_tail_gr_param_xi Source code
heavy_tail_kernel Source code
heavy_tail_params Source code
heavy_tail_params_xi Source code
heavy_tail_weight Source code
hpsne Source code
hsjse Source code
hsjse_stiffness Source code
hsjse_stiffness_fn Source code
hsnerv Source code
hsnerv_stiffness Source code
hsnerv_stiffness_fn Source code
hssne Source code
hssne_stiffness Source code
hssne_stiffness_fn Source code
htsne Source code
htssne Source code
iasne Source code
identity_weight Source code
iembed Source code
ih3sne Source code
ihasne Source code
ihpsne Source code
ihssne Source code
imp_kernel Source code
imp_weight_method Source code
improve_guess Source code
indegree_centrality Source code
init_embed Source code
init_out Source code
initrinsic_dimensionality Source code
inp_from_dint_max Source code
inp_from_perp Source code
inp_from_perps_multi Source code
inp_from_perps_multil Source code
inp_from_step_perp Source code
inp_prob Source code
inp_updated Source code
intrinsic_dimensionality_fd Source code
is_asymmetric_kernel Source code
is_color Source code
is_color_column Source code
is_enforced_joint_out_prob Source code
is_fully_symmetric_embedding Source code
is_joint_out_prob Source code
is_symmetric_kernel Source code
issne Source code
it3sne Source code
itsne Source code
itsne_cost_gr_param Source code
itsne_cost_gr_param_asymm Source code
itsne_cost_gr_param_plugin Source code
itsne_gr Source code
itsne_gr_param Source code
itsne_kernel Source code
itsne_weight Source code
itssne Source code
js_mixture Source code
jse Source code
jse_cost Source code
jse_cost_gr Source code
jse_cost_norm Source code
jse_cost_point Source code
jse_divergence Source code
jse_divergence_point Source code
jse_fg Source code
jse_inp_update Source code
jse_stiffness Source code
jse_stiffness_fn Source code
k_largest_ind Source code
k_shared_nbrs_ind Source code
k_smallest_ind Source code
kernel_gr_fd Source code
kl_cost Source code
kl_cost_gr Source code
kl_cost_point Source code
kl_divergence Source code
kl_divergence_gr Source code
kl_divergence_point Source code
kl_divergence_rows Source code
kl_fg Source code
klqp_update Source code
klqp_update_pjoint Source code
klqp_update_prow Source code
klqz_update Source code
klqz_update_pjoint Source code
klqz_update_prow Source code
kruskal_stress Source code
kruskal_stress_cost Source code
last_color_column_name Source code
last_factor_column_name Source code
lconcat Source code
length_vec Source code
lreplace Source code
make_color_brewer_ramp Source code
make_embedding_plot Source code
make_embedding_qplot Source code
make_final_reporter Source code
make_kernel_dynamic Source code
make_label Source code
make_normalized_cost_fn Source code
make_objective_fn Source code
make_optim_alt_fg Source code
make_optim_coord_fg Source code
make_optim_fg Source code
make_palette Source code
make_plot Source code
make_preprocess Source code
make_qplot Source code
make_quality_reporter Source code
make_reporter Source code
make_tricks Source code
mat_to_par Source code
max_scale_columns Source code
max_scale_matrix Source code
mean_relative_error Source code
mean_relative_error_cost Source code
metric_sstress Source code
metric_sstress_cost Source code
metric_sstress_cost_gr Source code
metric_sstress_cost_point Source code
metric_sstress_fg Source code
metric_sstress_point Source code
metric_stress Source code
metric_stress_cost Source code
metric_stress_cost_gr Source code
metric_stress_cost_point Source code
metric_stress_fg Source code
metric_stress_point Source code
mize Source code
mize_back_nag Source code
mize_back_nag_adapt Source code
mize_bfgs Source code
mize_bold_nag Source code
mize_bold_nag_adapt Source code
mize_grad_descent Source code
mize_opt Source code
mize_opt_alt Source code
mize_opt_alt_step Source code
mize_opt_step Source code
mmds Source code
mmds_stiffness Source code
mmds_stiffness_fn Source code
ms_perps Source code
ms_wrap_in_updated Source code
nbr_pres Man page Source code
nbr_pres_i Source code
nerv Source code
nerv_cost Source code
nerv_cost_gr Source code
nerv_cost_point Source code
nerv_fg Source code
nerv_stiffness Source code
nerv_stiffness_fn Source code
nn_graph Source code
no_kernel Source code
no_transform Source code
normalize Source code
normalized_stress Source code
normalized_stress_cost Source code
null_model_dist Source code
null_model_prob Source code
null_model_weight Source code
numeric_to_colors Source code
on_inp_updated Source code
opt_sneer Source code
optimize_stiffness Source code
out_from_PCA Source code
out_from_matrix Source code
out_from_rnorm Source code
out_from_runif Source code
out_from_scaled_PCA Source code
out_updated Source code
outdegree_centrality Source code
par_to_out Source code
param_gr Source code
param_stiffness_norm Source code
partial Source code
perplexity_rows Source code
plugin_stiffness Source code
plugin_stiffness_cond Source code
plugin_stiffness_fn Source code
plugin_stiffness_joint Source code
plugin_stiffness_ms Source code
plugin_stiffness_ms_cond Source code
plugin_stiffness_ms_fn Source code
plugin_stiffness_ms_joint Source code
plugin_stiffness_ms_pair Source code
plugin_stiffness_ms_row Source code
plugin_stiffness_pair Source code
plugin_stiffness_row Source code
plugin_stiffness_un Source code
pr_auc Source code
pr_auc_embed Man page Source code
pr_auc_row Source code
prob_embedder Source code
process_color_options Source code
promote_input_matrix Source code
prow_to_pavrow Source code
prow_to_pcond Source code
prow_to_pjoint Source code
psne Source code
qnx_crm Source code
random_matrix_norm Source code
random_matrix_unif Source code
range_scale_columns Source code
range_scale_matrix Source code
rasne Source code
reltol Source code
remove_nulls Source code
restart_if_possible Source code
reverse_asne_stiffness Source code
reverse_asne_stiffness_fn Source code
reverse_hssne_stiffness Source code
reverse_hssne_stiffness_fn Source code
reverse_kl_cost Source code
reverse_kl_cost_gr Source code
reverse_kl_cost_point Source code
reverse_kl_divergence_gr Source code
reverse_kl_divergence_point Source code
reverse_kl_fg Source code
reverse_ssne_stiffness Source code
reverse_ssne_stiffness_fn Source code
reverse_tsne_stiffness Source code
reverse_tsne_stiffness_fn Source code
reverse_unkl_cost Source code
reverse_unkl_fg Source code
rms_metric_stress Source code
rms_metric_stress_cost Source code
rnx_auc Source code
rnx_auc_crm Source code
rnx_auc_embed Man page Source code
rnx_crm Source code
roc_auc Source code
roc_auc_embed Man page Source code
roc_auc_row Source code
root_bisect Source code
rssne Source code
rtsne Source code
s1k Man page
sammon_fg Source code
sammon_map Source code
sammon_stiffness Source code
sammon_stiffness_fn Source code
sammon_stress Source code
sammon_stress_cost Source code
sammon_stress_cost_gr Source code
sammon_stress_cost_point Source code
sammon_stress_point Source code
sammon_stress_unnorm Source code
sammon_stress_unnorm_cost Source code
scale_distances Source code
scale_prec_to_perp Source code
scatterqplot Source code
sclamp Source code
scores_matrix Source code
scores_plot Source code
scores_qplot Source code
sd_scale_columns Source code
sd_scale_matrix Source code
set_heavy_tail_params_xi Source code
set_kernel_asymmetric Source code
set_solution Source code
shannon_entropy_rows Source code
should_update Source code
single_perplexity Source code
sjse Source code
sjse_stiffness Source code
sjse_stiffness_fn Source code
smmds Source code
smmds_stiffness Source code
smmds_stiffness_fn Source code
sneer Man page Man page Source code
sneer-package Man page
snerv Source code
snerv_stiffness Source code
snerv_stiffness_fn Source code
sqrt_exp_weight Source code
ssne Source code
ssne_stiffness Source code
ssne_stiffness_fn Source code
step_perps Source code
step_weight Source code
stiff_to_grads Source code
stiffness Source code
sum2_cost Source code
sum2_fg Source code
summarize Source code
summarize_betas Source code
symmetrize_matrix Source code
tasne Source code
tasne_stiffness Source code
tasne_stiffness_fn Source code
tdist_gr Source code
tdist_kernel Source code
tdist_weight Source code
tnerv Source code
tnerv_stiffness Source code
tnerv_stiffness_fn Source code
tpsne Source code
transfer_kernel_precisions Source code
tsne Source code
tsne_stiffness Source code
tsne_stiffness_fn Source code
tsne_tricks Source code
undirty Source code
unkl_cost Source code
unkl_divergence Source code
unkl_fg Source code
unnerv_cost Source code
unnerv_fg Source code
update_dist Source code
update_out Source code
update_out_if_necessary Source code
update_out_prob Source code
update_out_prob_ms Source code
update_probs Source code
upper_tri Source code
varfilter Source code
vec_formatC Source code
weights_to_pcond Source code
weights_to_probs Source code
weights_to_prow Source code
weights_to_pun Source code
whiten Source code
z_update Source code
jlmelville/sneer documentation built on Jan. 2, 2018, 2:27 a.m.