get_lower_bound: Calculate lower bound from Frechet-Weibull fit
In jmw86069/salsa: Single-cell Amalgamation by Latent Semantic Analysis (SALSA)

Description Usage Arguments Details Value See Also

Calculate lower bound from Frechet-Weibull fit

1	get_lower_bound(fit_fr_wei, ...)

`fit_fr_wei`	`fitdist` object output from `fitdist_fr_wei()`, or numeric vector with names `"fr_weight"`, `"fr_shape"`, `"fr_scale"`, `"wei_shape"`, `"wei_scale"`.
`...`	additional arguments are ignored.

This function takes the output from fitdist_fr_wei() and calculates the associated predicted lower bound for number of UMI to accept for downstream analysis of scRNA-seq data.

The equation:

fr_scale * (wei_scale / fr_scale) ^ (fr_weight / (fr_shape * wei_shape))

numeric value representing the lowest number of UMI to accept for downstream analysis of scRNA-seq data.

Other SALSA support functions: get_salsa_steps, get_upper_bound

jmw86069/salsa documentation built on May 21, 2019, 10:31 a.m.