get_salsa_table: Get SALSA results as a data.frame
In jmw86069/salsa: Single-cell Amalgamation by Latent Semantic Analysis (SALSA)

Description Usage Arguments Details Value See Also Examples

Get SALSA results as a data.frame

1	get_salsa_table(fit_list, verbose = FALSE, ...)

`fit_list`	`list` output from `do_salsa_steps()`, where each list element contains `min_count`, and one or more of `fit_fr` and `fit_fr_wei`.
`verbose`	logical indicating whether to print verbose output.
`...`	additional arguments are ignored.

This function converts the list of lists output from do_salsa_steps() into a "tidy" data.frame intended to be used for visualization.

data.frame containing one row per minimum count threshold, with columns containing the Frechet and Frechet-Weibull fit parameters, or NA values when there are no parameters for the given minimum count threshold.

Other SALSA core functions: do_salsa_steps

library(salsa);
data(oz2_numi_per_cell);
x <- oz2_numi_per_cell$count[oz2_numi_per_cell$count >= 16];
x_salsa <- do_salsa_steps(x,
   count_vector=c(16,32,128),
   cache_fr=NULL,
   cache_fr_wei=NULL);
x_df <- get_salsa_table(x_salsa);
x_df;