get_upper_bound: Calculate upper bound from Frechet fit
In jmw86069/salsa: Single-cell Amalgamation by Latent Semantic Analysis (SALSA)
Description
Usage
Arguments
Details
Value
See Also
Description
Calculate upper bound from Frechet fit
Usage
1
get_upper_bound(fit_fr, ...)
Arguments
fit_fr
fitdist object output from fitdist_fr(),
or numeric vector with names "shape", "scale".
...
additional arguments are ignored.
Details
This function takes the output from fitdist_fr() and
calculates the associated predicted upper bound for
number of UMI to accept for downstream analysis of
scRNA-seq data.
The equation:
scale + 2 * shape * scale * (base::gamma(1 - (1 / shape)) - 1)
Value
numeric value representing the highest number of UMI to
accept for downstream analysis of scRNA-seq data.
See Also
Other SALSA support functions: get_lower_bound,
get_salsa_steps
jmw86069/salsa documentation built on May 21, 2019, 10:31 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value See Also
Description
Calculate upper bound from Frechet fit
Usage
1 | get_upper_bound(fit_fr, ...)
|
Arguments
fit_fr |
|
... |
additional arguments are ignored. |
Details
This function takes the output from fitdist_fr() and
calculates the associated predicted upper bound for
number of UMI to accept for downstream analysis of
scRNA-seq data.
The equation:
scale + 2 * shape * scale * (base::gamma(1 - (1 / shape)) - 1)
Value
numeric value representing the highest number of UMI to accept for downstream analysis of scRNA-seq data.
See Also
Other SALSA support functions: get_lower_bound,
get_salsa_steps
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.