API for jmw86069/splicejam
Analysis and Visualization of Gene Splice Variants and Transcriptome Data
| Global functions | |
|---|---|
| StatDiagonalWideArc | Man page |
| addGRLgaps | Man page |
| addGRgaps | Man page |
| ale2violin | Man page |
| annotateGRLfromGRL | Man page |
| annotateGRfromGR | Man page |
| assignGRLexonNames | Man page |
| bgaPlotly3d | Man page |
| closestExonToJunctions | Man page |
| codonUsage2df | Man page |
| combineGRcoverage | Man page |
| compressPolygonM | Man page |
| curateDFtoDF | Man page |
| curateVtoDF | Man page |
| defineDetectedTx | Man page |
| describeGtfAttrNames | Man page |
| detectedTxInfo | Man page |
| df2colorSub | Man page |
| dfWide2segments | Man page |
| dna2codon | Man page |
| escapeWhitespaceRegexp | Man page |
| exoncov2polygon | Man page |
| factor2label | Man page |
| findOverlapsGRL | Man page |
| flattenExonsBy | Man page |
| gene2gg | Man page |
| geom_diagonal_wide_arc | Man page |
| geomean | Man page |
| getFirstStrandedFromGRL | Man page |
| getGRLgaps | Man page |
| getGRcoverageFromBw | Man page |
| getGRgaps | Man page |
| getGtfAttrs | Man page |
| get_fn_envir | Man page Source code |
| grl2df | Man page |
| groups2contrasts | Man page |
| import_juncs_from_bed | Man page |
| intercalate | Man page |
| internal_junc_score | Man page |
| jamCai | Man page |
| jamGeomean | Man page |
| jam_isDisjoint | Man page |
| jitter_norm | Man page |
| launchSashimiApp | Man page |
| list2im | Man page |
| makeTx2geneFromGtf | Man page |
| make_ref2compressed | Man page |
| plotSashimi | Man page |
| prepareSashimi | Man page |
| psl2df | Man page |
| readGtf | Man page |
| runDiffSplice | Man page |
| sashimiAppConstants | Man page |
| sashimiAppServer | Man page |
| sashimiAppUI | Man page |
| sashimiDataConstants | Man page |
| shrinkMatrix | Man page |
| simplifyXY | Man page |
| sortGRL | Man page |
| sortSamples | Man page |
| spliceGR2junctionDF | Man page |
| splicejam-extensions | Man page |
| spline3d | Man page |
| stackJunctions | Man page |
| stat_diagonal_wide_arc | Man page |
| strsplitOrdered | Man page |
| test_cov_gr | Man page |
| test_cov_wide_gr | Man page |
| test_exon_gr | Man page |
| test_exon_wide_gr | Man page |
| test_junc_gr | Man page |
| test_junc_wide_gr | Man page |
| to_basic.GeomShape | Man page |
| tx2ale | Man page |
