describeGtfAttrNames | R Documentation |
describe gtf/gff3 attribute names by feature type
describeGtfAttrNames(
GTF,
geneFeatureType = "gene",
txFeatureType = c("transcript", "mRNA"),
nrows = 10000,
maxNper = 10,
maxAttrs = 50,
zcat_command = "zcat",
verbose = FALSE,
...
)
GTF |
|
geneFeatureType , txFeatureType |
|
nrows |
|
maxNper |
|
maxAttrs |
|
zcat_command |
|
verbose |
|
... |
additional arguments are ignored. |
Note that when the "name" in a name/value pair is repeated,
the first instance retains the name, while subsequent instances
are versioned by jamba::makeNames(x, renameFirst=FALSE)
.
For example "tag"
may appear multiple times, the resulting colnames
will become: c("tag", "tag_v1", "tag_v2")
.
list
named by c(geneFeatureType, txFeatureType
with
data.frame
objects which have split the name/value pairs
into columns. Each data.frame
may have different columns,
using the observed name/value pair data.
Other jam gtf functions:
getGtfAttrs()
,
makeTx2geneFromGtf()
,
readGtf()
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