API for jnikelski/rmincIO
Package for reading and writing MINC2 files

Global functions
*,MincVolumeIO,MincVolumeIO-method	Man page
+,MincVolumeIO,MincVolumeIO-method	Man page
-,MincVolumeIO,MincVolumeIO-method	Man page
.First.lib	Man page
.Last.lib	Man page Source code
.onAttach	Source code
.onLoad	Source code
.requireCachedGenerics	Man page
/,MincVolumeIO,MincVolumeIO-method	Man page
MincInfo	Man page
MincInfo-class	Man page
MincSlice	Man page
MincSlice-class	Man page
MincSliceIO	Man page
MincSliceIO-class	Man page
MincVolumeIO	Man page
MincVolumeIO-class	Man page
MincVoxelIO	Man page
MincVoxelIO-class	Man page
[.pdMat	Man page
[.reStruct	Man page
[<-.pdMat	Man page
anatApply	Man page
anatCombineStructures	Man page
anatCreateVolume	Man page
anatFDR	Man page
anatGetAll	Man page
anatGetFile	Man page
anatLm	Man page
anatRenameRows	Man page
as.matrix.pdMat	Man page
as.matrix.reStruct	Man page
civet.AllROIs	Man page
civet.accessorIsImplemented	Source code
civet.checkVersion	Man page Source code
civet.computeNativeTissueVolumes	Man page Source code
civet.computeNativeToStxRescalingFactor	Man page Source code
civet.computeStxTissueVolumes	Man page Source code
civet.getAllFilenames	Man page
civet.getDirname	Source code
civet.getDirnameClassify	Source code
civet.getDirnameFinal	Source code
civet.getDirnameLogs	Source code
civet.getDirnameMask	Source code
civet.getDirnameNative	Source code
civet.getDirnameSurfaces	Source code
civet.getDirnameThickness	Source code
civet.getDirnameTransforms	Source code
civet.getDirnameTransformsLinear	Source code
civet.getDirnameTransformsNonlinear	Source code
civet.getDirnameVbm	Source code
civet.getDirnameVerify	Source code
civet.getFilename	Source code
civet.getFilenameCerebrumMask	Man page Source code
civet.getFilenameClassify	Man page Source code
civet.getFilenameCorticalThickness	Man page Source code
civet.getFilenameCsfPve	Man page Source code
civet.getFilenameGrayMatterPve	Man page Source code
civet.getFilenameGrayMatterSurfaces	Man page Source code
civet.getFilenameLinearTransform	Man page Source code
civet.getFilenameMeanSurfaceCurvature	Man page Source code
civet.getFilenameMidSurfaces	Man page Source code
civet.getFilenameNative	Source code
civet.getFilenameNativeNUC	Source code
civet.getFilenameNonlinearTransform	Man page Source code
civet.getFilenameSkullMask	Man page Source code
civet.getFilenameSkullMaskNative	Source code
civet.getFilenameStxT1	Man page Source code
civet.getFilenameVbmBlurred	Source code
civet.getFilenameWhiteMatterPve	Man page Source code
civet.getFilenameWhiteMatterSurfaces	Man page Source code
civet.getScanDirectoryName	Source code
civet.processArgsOpt	Source code
civet.processArgsSettings	Source code
civet.readCivetDatFiles	Man page Source code
civetAllROIs	Man page
civetFilenames	Man page
coef.modelStruct	Man page
corMatrix.pdMat	Man page
corMatrix.reStruct	Man page
f	Man page
fast.qvalue	Man page
fitted.lme	Man page
fitted.rmincLmeStruct	Man page
fixef.lme	Man page
formula.lme	Man page
formula.modelStruct	Man page
formula.pdMat	Man page
logDet.newpdNatural	Man page
logDet.pdMat	Man page
logDet.pdSymm	Man page
logLik.reStruct	Man page
logLik.rmincLme	Man page
logLik.rmincLmeStruct	Man page
logLik.rmincLmeStructInt	Man page
minc.get.hyperslab2	Man page
minc.get.slices	Man page
minc.get.volumes	Man page
minc.slice.loop	Man page
minc.t.test	Man page
minc.wilcoxon.test	Man page
mincAnova	Man page
mincApply	Man page
mincApplyLme	Man page
mincConvertVoxelToWorld	Man page
mincConvertWorldToVoxel	Man page
mincFileCheck	Man page
mincGetMask	Man page
mincGetVector	Man page
mincGetVoxel	Man page
mincGetWorldVoxel	Man page
mincIO.asVolume	Man page
mincIO.asVolume,array,MincVolumeIO,missing-method	Man page
mincIO.asVolume,array,missing,character-method	Man page
mincIO.asVolume-methods	Man page
mincIO.getProperty	Man page
mincIO.getProperty,MincInfo,character-method	Man page
mincIO.getProperty,MincSlice,character-method	Man page
mincIO.getProperty,MincSliceIO,character-method	Man page
mincIO.getProperty,MincVolumeIO,character-method	Man page
mincIO.getProperty,MincVoxelIO,character-method	Man page
mincIO.getProperty-methods	Man page
mincIO.getSliceFromSliceArray	Man page
mincIO.getSliceFromSliceArray,MincSliceIO-method	Man page
mincIO.getSliceFromSliceArray-methods	Man page
mincIO.getSliceX	Man page
mincIO.getSliceX,MincVolumeIO-method	Man page
mincIO.getSliceX-methods	Man page
mincIO.getSliceXYZ	Man page
mincIO.getSliceY	Man page
mincIO.getSliceY,MincVolumeIO-method	Man page
mincIO.getSliceY-methods	Man page
mincIO.getSliceZ	Man page
mincIO.getSliceZ,MincVolumeIO-method	Man page
mincIO.getSliceZ-methods	Man page
mincIO.makeNewSliceZ	Man page
mincIO.makeNewSliceZ,MincVolumeIO-method	Man page
mincIO.makeNewSliceZ-methods	Man page
mincIO.makeNewVolume	Man page
mincIO.makeNewVolume,character,missing,missing,missing,character	Man page
mincIO.makeNewVolume,character,missing,missing,missing,missing,c	Man page
mincIO.makeNewVolume,character,numeric,numeric,numeric,missing,m	Man page
mincIO.makeNewVolume-methods	Man page
mincIO.makeNewVolumeX	Man page Source code
mincIO.plotSlicePretty	Man page Source code
mincIO.print-methods	Man page
mincIO.printMincInfo	Man page Source code
mincIO.putSlice	Man page
mincIO.putSlice,MincSlice,MincVolumeIO-method	Man page
mincIO.putSlice-methods	Man page
mincIO.readBySlice	Man page
mincIO.readBySlice,character,numeric-method	Man page
mincIO.readBySlice-methods	Man page
mincIO.readByVoxel	Man page
mincIO.readByVoxel,character-method	Man page
mincIO.readByVoxel-methods	Man page
mincIO.readByVoxelX	Man page Source code
mincIO.readMincInfo	Man page Source code
mincIO.readVolume	Man page
mincIO.readVolume,MincInfo-method	Man page
mincIO.readVolume,character-method	Man page
mincIO.readVolume-methods	Man page
mincIO.readVolumeX	Man page Source code
mincIO.setProperty	Man page
mincIO.setProperty,MincInfo,character-method	Man page
mincIO.setProperty,MincSlice,character-method	Man page
mincIO.setProperty,MincSliceIO,character-method	Man page
mincIO.setProperty,MincVolumeIO,character-method	Man page
mincIO.setProperty,MincVoxelIO,character-method	Man page
mincIO.setProperty-methods	Man page
mincIO.writeVolume	Man page
mincIO.writeVolume,MincVolumeIO-method	Man page
mincIO.writeVolume-methods	Man page
mincIO.writeVolumeX	Man page Source code
mincSlowLme	Man page
mincSummary	Man page
mincWriteVolume.default	Man page
model.matrix.reStruct	Man page
needUpdate.modelStruct	Man page
needUpdate.reStruct	Man page
newACF	Man page
newBIC	Man page
newBIC.lm	Man page
newBIC.logLik	Man page
newDim	Man page
newDim.default	Man page
newDim.newpdNatural	Man page
newDim.pdMat	Man page
newDim.pdSymm	Man page
newInitialize	Man page
newInitialize.reStruct	Man page
newInitialize.rmincLmeStruct	Man page
newMEEM	Man page
newMEdecomp	Man page
newMEdims	Man page
newMEestimate	Man page
newNames	Man page
newNames.formula	Man page
newNames.pdMat	Man page
newNames.reStruct	Man page
newNames<-	Man page
newNames<-.pdMat	Man page
newNames<-.reStruct	Man page
newVariogram	Man page
newallVarsRec	Man page
newasOneFormula	Man page
newasTable	Man page
newaugPred	Man page
newcoef.newpdNatural	Man page
newcoef.pdMat	Man page
newcoef.pdSymm	Man page
newcoef.reStruct	Man page
newcoef<-	Man page
newcoef<-.modelStruct	Man page
newcoef<-.pdMat	Man page
newcoef<-.reStruct	Man page
newcoefficients<-	Man page
newcollapse	Man page
newcomparePred	Man page
newcovariate<-	Man page
newfdHess	Man page
newfixed.effects	Man page
newfixef	Man page
newformula.reStruct	Man page
newgetCovariate	Man page
newgetCovariate.data.frame	Man page
newgetCovariateFormula	Man page
newgetData	Man page
newgetFixDF	Man page
newgetGroups	Man page
newgetGroups.data.frame	Man page
newgetGroups.lme	Man page
newgetGroupsFormula	Man page
newgetGroupsFormula.default	Man page
newgetGroupsFormula.lme	Man page
newgetGroupsFormula.reStruct	Man page
newgetResponseFormula	Man page
newintervals	Man page
newisBalanced	Man page
newisInitialized	Man page
newisInitialized.pdMat	Man page
newisInitialized.reStruct	Man page
newlogDet	Man page
newlogDet.reStruct	Man page
newmatrix<-	Man page
newmatrix<-.pdMat	Man page
newmatrix<-.reStruct	Man page
newneedUpdate	Man page
newneedUpdate.default	Man page
newpdConstruct	Man page
newpdConstruct.newpdLogChol	Man page
newpdConstruct.newpdNatural	Man page
newpdConstruct.pdMat	Man page
newpdConstruct.pdSymm	Man page
newpdFactor	Man page
newpdFactor.newpdLogChol	Man page
newpdFactor.newpdNatural	Man page
newpdFactor.pdMat	Man page
newpdFactor.pdSymm	Man page
newpdFactor.reStruct	Man page
newpdLogChol	Man page
newpdMatrix	Man page
newpdMatrix.newpdNatural	Man page
newpdMatrix.pdMat	Man page
newpdMatrix.pdSymm	Man page
newpdMatrix.reStruct	Man page
newpdNatural	Man page
newrandom.effects	Man page
newranef	Man page
newrecalc	Man page
newrecalc.modelStruct	Man page
newrecalc.reStruct	Man page
newsplitFormula	Man page
newvarFunc	Man page
newvarWeights	Man page
pdMat	Man page
pdSymm	Man page
plot,MincSlice,ANY-method	Man page
plot,MincSlice-method	Man page
plot,MincVolumeIO,ANY-method	Man page
plot,MincVolumeIO-method	Man page
plot-methods	Man page
plot.pdMat	Man page
print,MincInfo-method	Man page
print,MincSlice-method	Man page
print,MincSliceIO-method	Man page
print,MincVolumeIO-method	Man page
print,MincVoxelIO-method	Man page
print-methods	Man page
print.anatMatrix	Man page
print.correlation	Man page
print.mincMultiDim	Man page
print.mincQvals	Man page
print.mincSingleDim	Man page
print.mincVoxel	Man page
print.modelStruct	Man page
print.pdMat	Man page
print.reStruct	Man page
print.rmincLme	Man page
print.summary.lme	Man page
print.summary.modelStruct	Man page
print.summary.pdMat	Man page
print.vertexMultiDim	Man page
pt2	Man page
reStruct	Man page
residuals.rmincLmeStruct	Man page
rmincIO	Man page
rmincIO-package	Man page
rmincLme	Man page
rmincLme.formula	Man page
rmincLmeApVar	Man page
rmincLmeControl	Man page
rmincLmeLoop	Man page
rmincLmeScale	Man page
rmincLmeStruct	Man page
rmincUtil.asMinc2	Man page Source code
rmincUtil.asMniObjAscii	Source code
rmincUtil.checkForExternalProgram	Man page Source code
rmincUtil.convertVoxelToWorld	Man page Source code
rmincUtil.convertWorldToVoxel	Man page Source code
rmincUtil.getDataClassCode	Man page Source code
rmincUtil.getDataClasses	Man page Source code
rmincUtil.getDataTypeCode	Man page Source code
rmincUtil.getDataTypes	Man page Source code
rmincUtil.getVolumeDimnames	Source code
rmincUtil.isMinc	Man page Source code
rmincUtil.isMinc1	Man page Source code
rmincUtil.isMinc2	Man page Source code
rmincUtil.isMniObj	Source code
rmincUtil.isMniObjAscii	Source code
rmincUtil.isMniObjBinary	Source code
rmincUtil.isReadable	Man page Source code
rmincUtil.readLinearXfmFile	Man page Source code
show,MincInfo-method	Man page
show,MincSlice-method	Man page
show,MincSliceIO-method	Man page
show,MincVolumeIO-method	Man page
show,MincVoxelIO-method	Man page
show-methods	Man page
solve.newpdLogChol	Man page
solve.newpdNatural	Man page
solve.pdMat	Man page
solve.pdSymm	Man page
solve.reStruct	Man page
summary.modelStruct	Man page
summary.newpdLogChol	Man page
summary.newpdNatural	Man page
summary.pdMat	Man page
summary.pdSymm	Man page
summary.reStruct	Man page
summary.rmincLme	Man page
update.modelStruct	Man page
update.reStruct	Man page
update.rmincLme	Man page
varWeights.rmincLmeStruct	Man page
varWeights.varFunc	Man page
vertexFDR	Man page
vertexLm	Man page
vertexTable	Man page
volume.combineMaskVolumes	Man page Source code
volume.explodeLabelVolume	Man page Source code
wilcox.permutation	Man page
wilcox.permutation.full	Man page