Description Usage Arguments Value References See Also Examples
View source: R/animation-methods.R
An interesting subset of analyses of large phylogenetic
sequencing projects is to produce an ordination based on
all of the samples in the project, and then plot the
relative “movement” of the samples (often microbial
communities) over time. This function is intended to
produce just that. It expects that you will provide a
phyloseq-class
object, an
ordination result based on that object, and the variable
name of the “time” covariate within the
sampleData-class
component of the
phyloseq object. A great many parameters are passed on to
animate
, or even further to
ani.options
.
1 2 3 |
physeq |
(Required). A
|
t |
(Required). A |
ord.result |
(Required). An ordination result, as
defined by the |
axes |
(Optional). A two-element integer vector that
defines the axes (aka coordinate, component, dimension)
within the ordination result that will be used. Default
is to take the first two axes (a good place to start).
|
color |
(Optional). A |
shape |
(Optional). A |
ggplot2_expr |
(Optional). A
|
movie.name |
(Optional). A character string of the
desired name for the output movie file. Default is
|
... |
(Optional). Additional arguments passed to
|
A .gif
animation file. Support is planned for
other output file types supported by
animation
.
http://cran.r-project.org/web/packages/animation/animation.pdf
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