pbmc_asurat: Single-cell RNA-seq data of peripheral blood mononuclear...
In johannesnicolaus/ASURAT_source: Assisting Interpretable Classifications in Single-cell Transcriptomics
Description
Usage
Format
Source
Description
Original data "4k PBMCs from a Healthy Donor" downloaded from 10x
Genomics database. Quality control was performed to remove cell outliers.
Usage
1
Format
An R list consisting of the following items:
- mat_expression
a matrix with 1016 rows and 527 columns,
of which the row and column names, and entries stand for gene symbols,
cell barcodes, and raw read counts, respectively.
- gene_symbol
a one-dimensional vector with 1016 elements of
gene symbols, corresponding to the rows of mat_expression.
- gene_entrez
a one-dimensional vector with 1016 elements of
Entrez gene IDs, corresponding to the rows of mat_expression.
- sample_identity
a one-dimensional vector with 527 elements of
cell barcodes, corresponding to the columns of mat_expression.
Source
https://support.10xgenomics.com/single-cell-gene-expression
johannesnicolaus/ASURAT_source documentation built on Dec. 21, 2021, 2:11 a.m.
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Description Usage Format Source
Description
Original data "4k PBMCs from a Healthy Donor" downloaded from 10x Genomics database. Quality control was performed to remove cell outliers.
Usage
1 |
Format
An R list consisting of the following items:
- mat_expression
a matrix with 1016 rows and 527 columns, of which the row and column names, and entries stand for gene symbols, cell barcodes, and raw read counts, respectively.
- gene_symbol
a one-dimensional vector with 1016 elements of gene symbols, corresponding to the rows of mat_expression.
- gene_entrez
a one-dimensional vector with 1016 elements of Entrez gene IDs, corresponding to the rows of mat_expression.
- sample_identity
a one-dimensional vector with 527 elements of cell barcodes, corresponding to the columns of mat_expression.
Source
https://support.10xgenomics.com/single-cell-gene-expression
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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