separate_variables_sign: Classify genes annotated with each biological description...

In johannesnicolaus/ASURAT_source: Assisting Interpretable Classifications in Single-cell Transcriptomics

Description

Classify genes annotated with each biological description into three groups: strongly correlated gene set (SCG), variably correlated gene set (VCG), and weakly correlated gene set (WCG).

Usage

separate_variables_sign(obj, obj_cor, data_type, method, th_posi, th_nega)

Arguments

obj	ASURAT object.
obj_cor	***Need clarification***
data_type	Database to use. ***Need clarification***
method	Method for correlation calculation (e.g. "spearman")
th_posi	Positive threshold to classify SCG and WCG.
th_nega	Negative threshold to classify SCG and WCG.

Value

ASURAT object.

Examples

separate_variables_sign(obj = object,
obj_cor = day1_norm_cor,
data_type = "DO",
method = "spearman",
th_posi = 0.40, th_nega = -0.20)

johannesnicolaus/ASURAT_source documentation built on Dec. 21, 2021, 2:11 a.m.