countfastq: countfastq(fastqfile) Wrapper for counting number of reads...
In johnmcculloch/JAMS_BW: Just A Microbiology System
View source: R/sequence_handling_functions.R
countfastq R Documentation
countfastq(fastqfile)
Wrapper for counting number of reads and number of bases of a fastq file in the system.
Returns a vector with read counts and base counts.
Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Description
countfastq(fastqfile)
Wrapper for counting number of reads and number of bases of a fastq file in the system.
Returns a vector with read counts and base counts.
Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Usage
countfastq(fastqfile)
johnmcculloch/JAMS_BW documentation built on Jan. 6, 2025, 5:14 a.m.
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View source: R/sequence_handling_functions.R
| countfastq | R Documentation |
countfastq(fastqfile) Wrapper for counting number of reads and number of bases of a fastq file in the system. Returns a vector with read counts and base counts. Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Description
countfastq(fastqfile) Wrapper for counting number of reads and number of bases of a fastq file in the system. Returns a vector with read counts and base counts. Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Usage
countfastq(fastqfile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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