View source: R/filtering_functions.R
filter_experiment | R Documentation |
Filters a SummarizedExperiment object by several criteria.
filter_experiment(
ExpObj = NULL,
featmaxatleastPPM = 0,
featcutoff = c(0, 0),
discard_SDoverMean_below = NULL,
samplesToKeep = NULL,
featuresToKeep = NULL,
normalization = "relabund",
asPPM = TRUE,
PPM_normalize_to_bases_sequenced = FALSE,
flush_out_empty_samples = FALSE,
GenomeCompletenessCutoff = NULL,
PctFromCtgscutoff = NULL
)
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