declare_filtering_presets: declare_filtering_presets(analysis = NULL, applyfilters =...
In johnmcculloch/JAMS_BW: Just A Microbiology System
View source: R/filtering_functions.R
declare_filtering_presets R Documentation
declare_filtering_presets(analysis = NULL, applyfilters = NULL, featcutoff = NULL, GenomeCompletenessCutoff = NULL, PctFromCtgscutoff = NULL, maxl2fc = NULL, minl2fc = NULL)
Description
Performs vetting of a SummarizedExperiment object for use in several functions
Usage
declare_filtering_presets(
analysis = NULL,
is16S = FALSE,
applyfilters = NULL,
featcutoff = NULL,
GenomeCompletenessCutoff = NULL,
PctFromCtgscutoff = NULL,
maxl2fc = NULL,
minl2fc = NULL,
minabscorrcoeff = NULL
)
johnmcculloch/JAMS_BW documentation built on Jan. 6, 2025, 5:14 a.m.
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View source: R/filtering_functions.R
| declare_filtering_presets | R Documentation |
declare_filtering_presets(analysis = NULL, applyfilters = NULL, featcutoff = NULL, GenomeCompletenessCutoff = NULL, PctFromCtgscutoff = NULL, maxl2fc = NULL, minl2fc = NULL)
Description
Performs vetting of a SummarizedExperiment object for use in several functions
Usage
declare_filtering_presets(
analysis = NULL,
is16S = FALSE,
applyfilters = NULL,
featcutoff = NULL,
GenomeCompletenessCutoff = NULL,
PctFromCtgscutoff = NULL,
maxl2fc = NULL,
minl2fc = NULL,
minabscorrcoeff = NULL
)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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