countfastq_files: countfastq_files(fastqfiles = NULL, threads = NULL) Wrapper...
In johnmcculloch/JAMS_BW: Just A Microbiology System
View source: R/sequence_handling_functions.R
countfastq_files R Documentation
countfastq_files(fastqfiles = NULL, threads = NULL)
Wrapper for applying the countfastq() function to a vector of filenames using multiple threads.
Returns a dataframe with read counts and base counts for each input fastq file.
Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Description
countfastq_files(fastqfiles = NULL, threads = NULL)
Wrapper for applying the countfastq() function to a vector of filenames using multiple threads.
Returns a dataframe with read counts and base counts for each input fastq file.
Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Usage
countfastq_files(fastqfiles = NULL, threads = NULL)
johnmcculloch/JAMS_BW documentation built on Jan. 6, 2025, 5:14 a.m.
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View source: R/sequence_handling_functions.R
| countfastq_files | R Documentation |
countfastq_files(fastqfiles = NULL, threads = NULL) Wrapper for applying the countfastq() function to a vector of filenames using multiple threads. Returns a dataframe with read counts and base counts for each input fastq file. Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Description
countfastq_files(fastqfiles = NULL, threads = NULL) Wrapper for applying the countfastq() function to a vector of filenames using multiple threads. Returns a dataframe with read counts and base counts for each input fastq file. Caveat: Input fastq file must have exactly four lines per sequence. If your fastq files do not fit this criterion, you are totally bonkers.
Usage
countfastq_files(fastqfiles = NULL, threads = NULL)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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