Files in jokergoo/ComplexHeatmap
Make Complex Heatmaps

.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/getting-help.md
.github/workflows/R-CMD-check.yaml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/00_S4_generic_methods.R R/00_size.R R/3d.R R/AdditiveUnit-class.R R/AnnotationFunction-class.R R/AnnotationFunction-function.R R/ColorMapping-class.R R/Heatmap-class.R R/Heatmap-draw_component.R R/Heatmap-layout.R R/Heatmap-utils.R R/HeatmapAnnotation-class.R R/HeatmapList-class.R R/HeatmapList-draw_component.R R/HeatmapList-get_order.R R/HeatmapList-layout.R R/HeatmapList-legends.R R/SingleAnnotation-class.R R/Upset.R R/anno_textbox.R R/annotation_axis.R R/box_align.R R/decorate.R R/densityHeatmap.R R/genomic.R R/global.R R/grid.Legend.R R/grid.dendrogram.R R/gridtext.R R/is_abs_unit.R R/oncoPrint.R R/other_translation.R R/overview.R R/pheatmap_translate.R R/stacked_plot.R R/temp.R R/utils.R R/zzz.R README.md
_pkgdown.yml
build_pkg_site.R
docs/404.html
docs/LICENSE-text.html
docs/articles/complex_heatmap.html
docs/articles/index.html
docs/articles/most_probably_asked_questions.html
docs/articles/most_probably_asked_questions_files/figure-html/unnamed-chunk-6-1.png
docs/articles/most_probably_asked_questions_files/figure-html/unnamed-chunk-7-1.png
docs/articles/most_probably_asked_questions_files/figure-html/unnamed-chunk-8-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
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docs/pkgdown.js
docs/pkgdown.yml
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docs/reference/ComplexHeatmap-package.html
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docs/reference/add_heatmap-HeatmapList-method.html
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docs/reference/test_alter_fun-1.png
docs/reference/test_alter_fun.html
docs/reference/test_alter_fun.rd
docs/reference/unify_mat_list.html
docs/reference/unify_mat_list.rd
docs/reference/upset_right_annotation.html
docs/reference/upset_right_annotation.rd
docs/reference/upset_top_annotation.html
docs/reference/upset_top_annotation.rd
docs/reference/width.AnnotationFunction.html
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docs/reference/width.Heatmap.html
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docs/reference/width.HeatmapList.html
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docs/reference/width.Legends.html
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docs/reference/width.SingleAnnotation.html
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docs/reference/widthAssign.AnnotationFunction.html
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inst/CITATION
inst/extdata/dmr_summary.rds
inst/extdata/gene_expression.rds
inst/extdata/generate_random_dataset.R
inst/extdata/gr.rds
inst/extdata/measles.rds
inst/extdata/meth.rds
inst/extdata/rand_mat.rds
inst/extdata/random_meth_expr_data.RData
inst/extdata/sample_order.txt
inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.rds
inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.txt
logo.R man/AdditiveUnit-class.Rd man/AdditiveUnit.Rd man/AnnotationFunction-class.Rd man/AnnotationFunction.Rd man/ColorMapping-class.Rd man/ColorMapping.Rd man/ComplexHeatmap-package.Rd man/Extract.AnnotationFunction.Rd man/Extract.Heatmap.Rd man/Extract.HeatmapAnnotation.Rd man/Extract.HeatmapList.Rd man/Extract.SingleAnnotation.Rd man/Extract.comb_mat.Rd man/Extract.gridtext.Rd man/Heatmap-class.Rd man/Heatmap.Rd man/Heatmap3D.Rd man/HeatmapAnnotation-class.Rd man/HeatmapAnnotation.Rd man/HeatmapList-class.Rd man/HeatmapList.Rd man/Legend.Rd man/Legends-class.Rd man/Legends.Rd man/SingleAnnotation-class.Rd man/SingleAnnotation.Rd man/UpSet.Rd man/add.AdditiveUnit.Rd man/add_heatmap-Heatmap-method.Rd man/add_heatmap-HeatmapAnnotation-method.Rd man/add_heatmap-HeatmapList-method.Rd man/add_heatmap-dispatch.Rd man/adjust_dend_by_x.Rd man/adjust_heatmap_list-HeatmapList-method.Rd man/alter_graphic.Rd man/anno_barplot.Rd man/anno_block.Rd man/anno_boxplot.Rd man/anno_customize.Rd man/anno_density.Rd man/anno_empty.Rd man/anno_histogram.Rd man/anno_horizon.Rd man/anno_image.Rd man/anno_joyplot.Rd man/anno_lines.Rd man/anno_link.Rd man/anno_mark.Rd man/anno_numeric.Rd man/anno_oncoprint_barplot.Rd man/anno_points.Rd man/anno_simple.Rd man/anno_summary.Rd man/anno_text.Rd man/anno_textbox.Rd man/anno_zoom.Rd man/annotation_axis_grob.Rd man/annotation_legend_size-HeatmapList-method.Rd man/attach_annotation-Heatmap-method.Rd man/bar3D.Rd man/bin_genome.Rd man/c.ColorMapping.Rd man/c.HeatmapAnnotation.Rd man/cluster_between_groups.Rd man/cluster_within_group.Rd man/color_mapping_legend-ColorMapping-method.Rd man/columnAnnotation.Rd man/column_dend-Heatmap-method.Rd man/column_dend-HeatmapList-method.Rd man/column_dend-dispatch.Rd man/column_order-Heatmap-method.Rd man/column_order-HeatmapList-method.Rd man/column_order-dispatch.Rd man/comb_degree.Rd man/comb_name.Rd man/comb_size.Rd man/compare_heatmap.2.Rd man/compare_heatmap.Rd man/compare_pheatmap.Rd man/complement_size.Rd man/component_height-Heatmap-method.Rd man/component_height-HeatmapList-method.Rd man/component_height-dispatch.Rd man/component_width-Heatmap-method.Rd man/component_width-HeatmapList-method.Rd man/component_width-dispatch.Rd man/copy_all-AnnotationFunction-method.Rd man/copy_all-SingleAnnotation-method.Rd man/copy_all-dispatch.Rd man/decorate_annotation.Rd man/decorate_column_dend.Rd man/decorate_column_names.Rd man/decorate_column_title.Rd man/decorate_dend.Rd man/decorate_dimnames.Rd man/decorate_heatmap_body.Rd man/decorate_row_dend.Rd man/decorate_row_names.Rd man/decorate_row_title.Rd man/decorate_title.Rd man/default_axis_param.Rd man/default_get_type.Rd man/dend_heights.Rd man/dend_xy.Rd man/dendrogramGrob.Rd man/densityHeatmap.Rd man/dim.Heatmap.Rd man/dist2.Rd man/draw-AnnotationFunction-method.Rd man/draw-Heatmap-method.Rd man/draw-HeatmapAnnotation-method.Rd man/draw-HeatmapList-method.Rd man/draw-Legends-method.Rd man/draw-SingleAnnotation-method.Rd 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tests/.directory
tests/test-AnnotationFunction.R tests/test-ColorMapping-class.R tests/test-Heatmap-class.R tests/test-Heatmap-cluster.R tests/test-HeatmapAnnotation.R tests/test-HeatmapList-class.R tests/test-Legend.R tests/test-SingleAnnotation.R tests/test-annotation_axis.R tests/test-dendrogram.R tests/test-gridtext.R tests/test-interactive.R tests/test-multiple-page.R tests/test-oncoPrint.R tests/test-pheatmap.R tests/test-textbox.R tests/test-upset.R tests/test-utils.R tests/testthat-all.R tests/testthat/testhat-utiles.R tests/testthat/testthat-ColorMapping.R tests/testthat/testthat-HeatmapAnnotation-size.R tests/testthat/testthat-UpSet.R vignettes/complex_heatmap.rmd
vignettes/custom.css
vignettes/most_probably_asked_questions.Rmd
jokergoo/ComplexHeatmap documentation built on Sept. 24, 2024, 4:48 p.m.