collect_stats-ConsensusPartitionList-method: Draw and compare statistics for multiple methods

In jokergoo/cola: A Framework for Consensus Partitioning

Draw and compare statistics for multiple methods

Description

Draw and compare statistics for multiple methods

Usage

## S4 method for signature 'ConsensusPartitionList'
collect_stats(object, k, layout_nrow = 2, all_stats = FALSE, ...)

Arguments

object	A ConsensusPartitionList-class object.
k	Number of subgroups.
layout_nrow	Number of rows in the layout
all_stats	Whether to show all statistics that were calculated. Used internally.
...	Other arguments

Details

It draws heatmaps for statistics for multiple methods in parallel, so that users can compare which combination of methods gives the best results with given the number of subgroups.

Examples

data(golub_cola)
collect_stats(golub_cola, k = 3)

jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.