compare_signatures-HierarchicalPartition-method: Compare Signatures from Different Nodes

In jokergoo/cola: A Framework for Consensus Partitioning

Compare Signatures from Different Nodes

Description

Compare Signatures from Different Nodes

Usage

## S4 method for signature 'HierarchicalPartition'
compare_signatures(object, merge_node = merge_node_param(),
    method = c("euler", "upset"), upset_max_comb_sets = 20,
    verbose = interactive(), ...)

Arguments

object	A HierarchicalPartition-class object.
merge_node	Parameters to merge sub-dendrograms, see merge_node_param.
method	Method to visualize.
upset_max_comb_sets	Maximal number of combination sets to show.
verbose	Whether to print message.
...	Other arguments passed to get_signatures,HierarchicalPartition-method.

Details

It plots an Euler diagram or a UpSet plot showing the overlap of signatures from different nodes. On each node, the number of subgroups is inferred by suggest_best_k,ConsensusPartition-method.

Examples

data(golub_cola_rh)
compare_signatures(golub_cola_rh)

jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.