Files in jokergoo/cola

A Framework for Consensus Partitioning

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R/00_S4_generic_methods.R R/00_classes.R R/RcppExports.R R/cola.R R/collect.R R/compare_partitions.R R/consensus_partition.R R/correspond_rank.R R/data.R R/dend_utils.R R/dimension_reduction.R R/down_sampling.R R/functional_enrichment.R R/get.R R/hierarchical_0.R R/hierarchical_dend.R R/hierarchical_methods.R R/merge_back.R R/predict.R R/report.R R/run_all_methods.R R/sample_by_columns.R R/signatures.R R/stat.R R/test_with_known.R R/top_rows.R R/use.R R/utils.R R/z.global.R R/z.register.R R/zzz.R README.md

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man/show-dispatch.Rd man/split_node-HierarchicalPartition-method.Rd man/suggest_best_k-ConsensusPartition-method.Rd man/suggest_best_k-ConsensusPartitionList-method.Rd man/suggest_best_k-HierarchicalPartition-method.Rd man/suggest_best_k-dispatch.Rd man/test_between_factors.Rd man/test_to_known_factors-ConsensusPartition-method.Rd man/test_to_known_factors-ConsensusPartitionList-method.Rd man/test_to_known_factors-DownSamplingConsensusPartition-method.Rd man/test_to_known_factors-HierarchicalPartition-method.Rd man/test_to_known_factors-dispatch.Rd man/top_elements_overlap.Rd man/top_rows_heatmap-ConsensusPartition-method.Rd man/top_rows_heatmap-ConsensusPartitionList-method.Rd man/top_rows_heatmap-HierarchicalPartition-method.Rd man/top_rows_heatmap-dispatch.Rd man/top_rows_heatmap-matrix-method.Rd man/top_rows_overlap-ConsensusPartitionList-method.Rd man/top_rows_overlap-HierarchicalPartition-method.Rd man/top_rows_overlap-dispatch.Rd man/top_rows_overlap-matrix-method.Rd

src/RcppExports.cpp

src/atc.cpp

src/cal_consensus_mat.cpp

src/pdist.cpp

tests/test-all.R tests/testthat/test-stats.R tests/testthat/test_column_sampling.R tests/testthat/test_pdist.R tests/testthat/test_relabel.R

vignettes/.directory

vignettes/AML.Rmd vignettes/ATC.R vignettes/ATC_methods.Rmd vignettes/PAC.R vignettes/cola.Rmd vignettes/cola_general.Rmd vignettes/cola_quick.Rmd vignettes/compare_partitions.Rmd

vignettes/compare_partitions_example.html

vignettes/consensus_partition_workflow.png

vignettes/examples.Rmd vignettes/functional_enrichment.Rmd vignettes/hierarchical.Rmd

vignettes/hierarchical_partitioning_workflow.png

vignettes/large_k_problem_consensus_heatmap-min.png

vignettes/large_k_problem_select_partition_number-min.png

vignettes/lt_functional_enrichment_TCGA_GBM.rds

vignettes/membership_heatmap.png

vignettes/predict.Rmd vignettes/rand_jaccard.R

vignettes/rand_jaccard.png

vignettes/silhouette.R

vignettes/skmeans.png

vignettes/test_NMF.R vignettes/vignette_example.R vignettes/work_with_big_datasets.Rmd

jokergoo/cola documentation built on Feb. 29, 2024, 1:41 a.m.